Hb_006911_050

Information

Type -
Description -
Location Contig6911: 51676-53715
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26940g
description POPTRDRAFT_829661; hypothetical protein
nr
ID XP_012065619.1
description PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16872 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54355: 51698-53713
cDNA
(Sanger)
(ID:Location)		 038_F07.ab1: 51709-53713

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006911_050 0.0 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
2 Hb_000256_070 0.2135989264 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
3 Hb_000032_450 0.234712157 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
4 Hb_004899_060 0.2361397841 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
5 Hb_001711_050 0.2574252078 - - -
6 Hb_001008_180 0.2623281885 - - -
7 Hb_001006_220 0.2627140695 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
8 Hb_000115_010 0.2639545417 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_160715_010 0.2654829373 - - -
10 Hb_003688_160 0.2655773525 - - Presenilin-like family protein [Populus trichocarpa]
11 Hb_002863_120 0.2744917906 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
12 Hb_176825_010 0.2822762231 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
13 Hb_005408_060 0.2849393221 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
14 Hb_000820_050 0.2865366659 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
15 Hb_001366_120 0.2874174311 - - unknown [Zea mays]
16 Hb_000450_150 0.2876419748 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
17 Hb_078897_010 0.2883538087 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
18 Hb_001289_020 0.288424151 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
19 Hb_008159_010 0.2931235478 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
20 Hb_000312_050 0.2952242596 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006911_050 Hb_006911_050 Hb_000256_070 Hb_000256_070 Hb_006911_050--Hb_000256_070 Hb_000032_450 Hb_000032_450 Hb_006911_050--Hb_000032_450 Hb_004899_060 Hb_004899_060 Hb_006911_050--Hb_004899_060 Hb_001711_050 Hb_001711_050 Hb_006911_050--Hb_001711_050 Hb_001008_180 Hb_001008_180 Hb_006911_050--Hb_001008_180 Hb_001006_220 Hb_001006_220 Hb_006911_050--Hb_001006_220 Hb_000656_160 Hb_000656_160 Hb_000256_070--Hb_000656_160 Hb_000103_250 Hb_000103_250 Hb_000256_070--Hb_000103_250 Hb_000889_100 Hb_000889_100 Hb_000256_070--Hb_000889_100 Hb_017014_010 Hb_017014_010 Hb_000256_070--Hb_017014_010 Hb_004088_040 Hb_004088_040 Hb_000256_070--Hb_004088_040 Hb_000256_070--Hb_004899_060 Hb_105328_010 Hb_105328_010 Hb_000032_450--Hb_105328_010 Hb_000115_010 Hb_000115_010 Hb_000032_450--Hb_000115_010 Hb_003878_050 Hb_003878_050 Hb_000032_450--Hb_003878_050 Hb_000703_280 Hb_000703_280 Hb_000032_450--Hb_000703_280 Hb_007534_060 Hb_007534_060 Hb_000032_450--Hb_007534_060 Hb_026889_040 Hb_026889_040 Hb_000032_450--Hb_026889_040 Hb_001366_120 Hb_001366_120 Hb_004899_060--Hb_001366_120 Hb_005976_050 Hb_005976_050 Hb_004899_060--Hb_005976_050 Hb_003688_160 Hb_003688_160 Hb_004899_060--Hb_003688_160 Hb_001143_190 Hb_001143_190 Hb_004899_060--Hb_001143_190 Hb_031862_130 Hb_031862_130 Hb_004899_060--Hb_031862_130 Hb_008695_140 Hb_008695_140 Hb_004899_060--Hb_008695_140 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000928_050 Hb_000928_050 Hb_001711_050--Hb_000928_050 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_010534_050 Hb_010534_050 Hb_001711_050--Hb_010534_050 Hb_000327_160 Hb_000327_160 Hb_001008_180--Hb_000327_160 Hb_000950_010 Hb_000950_010 Hb_001008_180--Hb_000950_010 Hb_002748_030 Hb_002748_030 Hb_001008_180--Hb_002748_030 Hb_006816_470 Hb_006816_470 Hb_001008_180--Hb_006816_470 Hb_008159_010 Hb_008159_010 Hb_001008_180--Hb_008159_010 Hb_002748_020 Hb_002748_020 Hb_001008_180--Hb_002748_020 Hb_033413_010 Hb_033413_010 Hb_001006_220--Hb_033413_010 Hb_001006_220--Hb_026889_040 Hb_088327_010 Hb_088327_010 Hb_001006_220--Hb_088327_010 Hb_091349_010 Hb_091349_010 Hb_001006_220--Hb_091349_010 Hb_001006_220--Hb_000115_010 Hb_001006_220--Hb_001008_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58008 2.87316 6.10785 30.4595 2.33382 8.88279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 35.202 8.94736 11.4423

CAGE analysis