Hb_006726_010

Information

Type -
Description -
Location Contig6726: 98-7748
Sequence    

Annotation

kegg
ID tcc:TCM_039092
description hypothetical protein
nr
ID XP_009787887.1
description PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID Q7XXG1
description OSJNBb0089K24.9 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0089K24.9 PE=4 SV=2
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006726_010 0.0 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
2 Hb_007904_240 0.2401049959 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
3 Hb_000069_770 0.2817684937 - - translation initiation factor [Rheum australe]
4 Hb_021576_020 0.3257133249 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
5 Hb_000061_200 0.3266610986 - - nitrate transporter, putative [Ricinus communis]
6 Hb_000599_320 0.3322098714 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
7 Hb_000388_030 0.3431112198 - - hypothetical protein JCGZ_13427 [Jatropha curcas]
8 Hb_171065_010 0.3481263447 - - Ribonuclease H protein [Theobroma cacao]
9 Hb_032202_150 0.3505869335 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
10 Hb_014720_090 0.3525134022 - - -
11 Hb_001554_010 0.3592348352 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_000008_380 0.3645102218 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_007943_060 0.3645924829 - - Rop5 [Hevea brasiliensis]
14 Hb_000878_140 0.3663922237 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
15 Hb_000487_120 0.3680177131 - - conserved hypothetical protein [Ricinus communis]
16 Hb_134015_010 0.3690014543 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
17 Hb_009707_030 0.3727965691 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
18 Hb_011671_170 0.37477473 - - PREDICTED: protein DYAD [Jatropha curcas]
19 Hb_071130_050 0.37521235 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
20 Hb_010889_020 0.38222898 - - -

Gene co-expression network

sample Hb_006726_010 Hb_006726_010 Hb_007904_240 Hb_007904_240 Hb_006726_010--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_006726_010--Hb_000069_770 Hb_021576_020 Hb_021576_020 Hb_006726_010--Hb_021576_020 Hb_000061_200 Hb_000061_200 Hb_006726_010--Hb_000061_200 Hb_000599_320 Hb_000599_320 Hb_006726_010--Hb_000599_320 Hb_000388_030 Hb_000388_030 Hb_006726_010--Hb_000388_030 Hb_007904_240--Hb_021576_020 Hb_000878_140 Hb_000878_140 Hb_007904_240--Hb_000878_140 Hb_002998_070 Hb_002998_070 Hb_007904_240--Hb_002998_070 Hb_007943_060 Hb_007943_060 Hb_007904_240--Hb_007943_060 Hb_007904_240--Hb_000069_770 Hb_000069_770--Hb_021576_020 Hb_000487_120 Hb_000487_120 Hb_000069_770--Hb_000487_120 Hb_000069_770--Hb_002998_070 Hb_005306_010 Hb_005306_010 Hb_000069_770--Hb_005306_010 Hb_001554_010 Hb_001554_010 Hb_021576_020--Hb_001554_010 Hb_021576_020--Hb_002998_070 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_000061_200--Hb_000388_030 Hb_000027_040 Hb_000027_040 Hb_000061_200--Hb_000027_040 Hb_000389_190 Hb_000389_190 Hb_000061_200--Hb_000389_190 Hb_004453_100 Hb_004453_100 Hb_000061_200--Hb_004453_100 Hb_000712_050 Hb_000712_050 Hb_000061_200--Hb_000712_050 Hb_012753_220 Hb_012753_220 Hb_000599_320--Hb_012753_220 Hb_000025_170 Hb_000025_170 Hb_000599_320--Hb_000025_170 Hb_000008_380 Hb_000008_380 Hb_000599_320--Hb_000008_380 Hb_000599_320--Hb_000878_140 Hb_000703_040 Hb_000703_040 Hb_000599_320--Hb_000703_040 Hb_001818_030 Hb_001818_030 Hb_000599_320--Hb_001818_030 Hb_004324_160 Hb_004324_160 Hb_000388_030--Hb_004324_160 Hb_002259_190 Hb_002259_190 Hb_000388_030--Hb_002259_190 Hb_000321_130 Hb_000321_130 Hb_000388_030--Hb_000321_130 Hb_054865_070 Hb_054865_070 Hb_000388_030--Hb_054865_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0236914 0.0159263 0.0142099 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0135558 0.0258549 0.00538217 0

CAGE analysis