Hb_000389_190

Information

Type -
Description -
Location Contig389: 397474-398550
Sequence    

Annotation

kegg
ID rcu:RCOM_1516120
description ATPP2-A2, putative
nr
ID XP_012070309.1
description PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Jatropha curcas]
swissprot
ID O81865
description Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1
trembl
ID A0A067L678
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02619 PE=4 SV=1
Gene Ontology
ID GO:0050896
description protein phloem protein 2-like a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38981: 397470-398510
cDNA
(Sanger)
(ID:Location)		 014_P19.ab1: 397470-398510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000389_190 0.0 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Jatropha curcas]
2 Hb_000001_070 0.1452249306 - - -
3 Hb_000123_160 0.1687449665 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_000239_030 0.1749726036 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
5 Hb_002217_450 0.1799756817 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
6 Hb_002811_080 0.1802182857 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
7 Hb_004324_150 0.1805942761 - - -
8 Hb_000330_070 0.1821716366 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
9 Hb_011628_040 0.1854469647 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_165404_020 0.1876328915 - - hypothetical protein JCGZ_17789 [Jatropha curcas]
11 Hb_005496_010 0.1894580381 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
12 Hb_005015_030 0.1915863845 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
13 Hb_000392_380 0.1917912731 - - ubiquitin-conjugating enzyme [Medicago truncatula]
14 Hb_005731_170 0.1937070542 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
15 Hb_001157_010 0.1938762456 - - deoxyhypusine synthase, putative [Ricinus communis]
16 Hb_020419_020 0.1969428982 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_146225_010 0.1982942723 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
18 Hb_000236_150 0.1983349325 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
19 Hb_000905_180 0.1986983739 - - 60S ribosomal protein L31A [Hevea brasiliensis]
20 Hb_007497_030 0.199482679 - - mutt domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000389_190 Hb_000389_190 Hb_000001_070 Hb_000001_070 Hb_000389_190--Hb_000001_070 Hb_000123_160 Hb_000123_160 Hb_000389_190--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_000389_190--Hb_000239_030 Hb_002217_450 Hb_002217_450 Hb_000389_190--Hb_002217_450 Hb_002811_080 Hb_002811_080 Hb_000389_190--Hb_002811_080 Hb_004324_150 Hb_004324_150 Hb_000389_190--Hb_004324_150 Hb_000236_150 Hb_000236_150 Hb_000001_070--Hb_000236_150 Hb_000905_180 Hb_000905_180 Hb_000001_070--Hb_000905_180 Hb_000001_070--Hb_000239_030 Hb_002374_390 Hb_002374_390 Hb_000001_070--Hb_002374_390 Hb_005914_200 Hb_005914_200 Hb_000001_070--Hb_005914_200 Hb_062135_020 Hb_062135_020 Hb_000001_070--Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000318_490 Hb_000318_490 Hb_000123_160--Hb_000318_490 Hb_000123_160--Hb_000236_150 Hb_000123_160--Hb_000001_070 Hb_000115_230 Hb_000115_230 Hb_000239_030--Hb_000115_230 Hb_001157_010 Hb_001157_010 Hb_000239_030--Hb_001157_010 Hb_003326_020 Hb_003326_020 Hb_000239_030--Hb_003326_020 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000239_030--Hb_000236_150 Hb_000239_030--Hb_002217_450 Hb_001141_030 Hb_001141_030 Hb_002217_450--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_002217_450--Hb_003203_040 Hb_003398_120 Hb_003398_120 Hb_002217_450--Hb_003398_120 Hb_021409_090 Hb_021409_090 Hb_002217_450--Hb_021409_090 Hb_005841_050 Hb_005841_050 Hb_002217_450--Hb_005841_050 Hb_001863_400 Hb_001863_400 Hb_002217_450--Hb_001863_400 Hb_000567_410 Hb_000567_410 Hb_002811_080--Hb_000567_410 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_000975_320 Hb_000975_320 Hb_002811_080--Hb_000975_320 Hb_002588_010 Hb_002588_010 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010 Hb_004324_150--Hb_000318_490 Hb_030565_040 Hb_030565_040 Hb_004324_150--Hb_030565_040 Hb_004324_150--Hb_000123_160 Hb_004333_030 Hb_004333_030 Hb_004324_150--Hb_004333_030 Hb_002320_060 Hb_002320_060 Hb_004324_150--Hb_002320_060 Hb_000270_620 Hb_000270_620 Hb_004324_150--Hb_000270_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81709 5.79375 20.7947 10.6204 11.3755 27.5594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1411 89.0912 59.9598 11.6707 1.55492

CAGE analysis