Hb_004324_150

Information

Type -
Description -
Location Contig4324: 107637-108804
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_150 0.0 - - -
2 Hb_000318_490 0.1377226986 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
3 Hb_030565_040 0.1404220822 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
4 Hb_000123_160 0.153703251 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
5 Hb_004333_030 0.1624865836 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
6 Hb_002320_060 0.1702561582 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
7 Hb_000270_620 0.1703382298 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_000167_030 0.1751897678 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
9 Hb_002045_230 0.1777422202 - - Ammonium transporter 2 [Theobroma cacao]
10 Hb_000389_190 0.1805942761 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A1-like [Jatropha curcas]
11 Hb_001052_030 0.1812856935 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
12 Hb_000896_120 0.1827119155 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
13 Hb_032969_030 0.1849084383 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_178968_170 0.1850937855 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
15 Hb_000001_070 0.1859117536 - - -
16 Hb_000300_390 0.186502226 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
17 Hb_000035_440 0.1892764714 - - -
18 Hb_004735_050 0.1924052308 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_000976_250 0.1933927926 - - -
20 Hb_000979_250 0.193679721 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004324_150 Hb_004324_150 Hb_000318_490 Hb_000318_490 Hb_004324_150--Hb_000318_490 Hb_030565_040 Hb_030565_040 Hb_004324_150--Hb_030565_040 Hb_000123_160 Hb_000123_160 Hb_004324_150--Hb_000123_160 Hb_004333_030 Hb_004333_030 Hb_004324_150--Hb_004333_030 Hb_002320_060 Hb_002320_060 Hb_004324_150--Hb_002320_060 Hb_000270_620 Hb_000270_620 Hb_004324_150--Hb_000270_620 Hb_000318_490--Hb_000123_160 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_000318_490--Hb_030565_040 Hb_000976_250 Hb_000976_250 Hb_000318_490--Hb_000976_250 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_030565_040--Hb_004333_030 Hb_007520_060 Hb_007520_060 Hb_030565_040--Hb_007520_060 Hb_030565_040--Hb_002320_060 Hb_187083_010 Hb_187083_010 Hb_030565_040--Hb_187083_010 Hb_000236_460 Hb_000236_460 Hb_030565_040--Hb_000236_460 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_000896_120 Hb_000896_120 Hb_004333_030--Hb_000896_120 Hb_004333_030--Hb_187083_010 Hb_000106_100 Hb_000106_100 Hb_004333_030--Hb_000106_100 Hb_097007_010 Hb_097007_010 Hb_002320_060--Hb_097007_010 Hb_003549_020 Hb_003549_020 Hb_002320_060--Hb_003549_020 Hb_002320_060--Hb_000236_460 Hb_002320_060--Hb_187083_010 Hb_000645_190 Hb_000645_190 Hb_002320_060--Hb_000645_190 Hb_000103_550 Hb_000103_550 Hb_000270_620--Hb_000103_550 Hb_000270_620--Hb_000123_160 Hb_000270_620--Hb_000318_490 Hb_004159_050 Hb_004159_050 Hb_000270_620--Hb_004159_050 Hb_000920_320 Hb_000920_320 Hb_000270_620--Hb_000920_320 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231734 0.323945 0.42378 0.895146 0.377592 1.37585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56799 7.28861 3.77304 0.245254 0

CAGE analysis