Hb_000599_320

Information

Type -
Description -
Location Contig599: 316335-317305
Sequence    

Annotation

kegg
ID rcu:RCOM_0259080
description hypothetical protein
nr
ID KDP26504.1
description hypothetical protein JCGZ_17662 [Jatropha curcas]
swissprot
ID Q1G3K8
description CRIB domain-containing protein RIC7 OS=Arabidopsis thaliana GN=RIC7 PE=1 SV=1
trembl
ID A0A067K3W4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17662 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50502: 317052-317306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_320 0.0 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
2 Hb_012753_220 0.2772446047 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
3 Hb_000025_170 0.2933074706 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000008_380 0.2959592042 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000878_140 0.2969468666 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
6 Hb_000703_040 0.3116584501 - - hypothetical protein RCOM_1177160 [Ricinus communis]
7 Hb_001818_030 0.3179125099 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
8 Hb_009707_030 0.3207419863 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
9 Hb_014720_090 0.3214181931 - - -
10 Hb_003055_150 0.3227659835 - - serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000917_170 0.3243325394 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
12 Hb_002999_040 0.3258101785 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007904_240 0.3304812698 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
14 Hb_006726_010 0.3322098714 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
15 Hb_000321_130 0.3581687523 - - Alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_007943_060 0.3599630679 - - Rop5 [Hevea brasiliensis]
17 Hb_004204_110 0.3614732992 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
18 Hb_000453_110 0.3738552016 - - PREDICTED: alkaline/neutral invertase CINV2-like isoform X1 [Citrus sinensis]
19 Hb_032202_150 0.3754087564 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
20 Hb_003581_180 0.3766045691 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000599_320 Hb_000599_320 Hb_012753_220 Hb_012753_220 Hb_000599_320--Hb_012753_220 Hb_000025_170 Hb_000025_170 Hb_000599_320--Hb_000025_170 Hb_000008_380 Hb_000008_380 Hb_000599_320--Hb_000008_380 Hb_000878_140 Hb_000878_140 Hb_000599_320--Hb_000878_140 Hb_000703_040 Hb_000703_040 Hb_000599_320--Hb_000703_040 Hb_001818_030 Hb_001818_030 Hb_000599_320--Hb_001818_030 Hb_128486_010 Hb_128486_010 Hb_012753_220--Hb_128486_010 Hb_000352_200 Hb_000352_200 Hb_012753_220--Hb_000352_200 Hb_007904_250 Hb_007904_250 Hb_012753_220--Hb_007904_250 Hb_012753_220--Hb_000008_380 Hb_012753_220--Hb_000703_040 Hb_000025_170--Hb_000878_140 Hb_003581_180 Hb_003581_180 Hb_000025_170--Hb_003581_180 Hb_005725_150 Hb_005725_150 Hb_000025_170--Hb_005725_150 Hb_001946_350 Hb_001946_350 Hb_000025_170--Hb_001946_350 Hb_000025_170--Hb_007904_250 Hb_001890_020 Hb_001890_020 Hb_000025_170--Hb_001890_020 Hb_000008_380--Hb_000878_140 Hb_000155_090 Hb_000155_090 Hb_000008_380--Hb_000155_090 Hb_014720_010 Hb_014720_010 Hb_000008_380--Hb_014720_010 Hb_005375_050 Hb_005375_050 Hb_000008_380--Hb_005375_050 Hb_000130_450 Hb_000130_450 Hb_000008_380--Hb_000130_450 Hb_011512_160 Hb_011512_160 Hb_000008_380--Hb_011512_160 Hb_001545_070 Hb_001545_070 Hb_000878_140--Hb_001545_070 Hb_007943_060 Hb_007943_060 Hb_000878_140--Hb_007943_060 Hb_007904_240 Hb_007904_240 Hb_000878_140--Hb_007904_240 Hb_000878_140--Hb_014720_010 Hb_000487_120 Hb_000487_120 Hb_000878_140--Hb_000487_120 Hb_002259_190 Hb_002259_190 Hb_000703_040--Hb_002259_190 Hb_004324_160 Hb_004324_160 Hb_000703_040--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_000703_040--Hb_000321_130 Hb_000917_170 Hb_000917_170 Hb_000703_040--Hb_000917_170 Hb_054865_070 Hb_054865_070 Hb_000703_040--Hb_054865_070 Hb_000703_040--Hb_014720_010 Hb_002999_040 Hb_002999_040 Hb_001818_030--Hb_002999_040 Hb_001818_030--Hb_003581_180 Hb_000856_160 Hb_000856_160 Hb_001818_030--Hb_000856_160 Hb_000925_040 Hb_000925_040 Hb_001818_030--Hb_000925_040 Hb_152362_010 Hb_152362_010 Hb_001818_030--Hb_152362_010 Hb_015475_010 Hb_015475_010 Hb_001818_030--Hb_015475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.128949 0.0953279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.061173 0.109496 0 0

CAGE analysis