Hb_012753_220

Information

Type -
Description -
Location Contig12753: 115919-118602
Sequence    

Annotation

kegg
ID pda:103723399
description pentatricopeptide repeat-containing protein At4g18840-like
nr
ID XP_011029372.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
swissprot
ID P0C8Q7
description Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
trembl
ID M0VZ04
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_220 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
2 Hb_000599_320 0.2772446047 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
3 Hb_128486_010 0.2988899969 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
4 Hb_000352_200 0.3185068018 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
5 Hb_007904_250 0.3227757995 - - PREDICTED: vignain-like [Jatropha curcas]
6 Hb_000008_380 0.3368866133 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000703_040 0.3371371067 - - hypothetical protein RCOM_1177160 [Ricinus communis]
8 Hb_128524_020 0.3380486531 - - PREDICTED: aspartic proteinase-like protein 2 isoform X2 [Jatropha curcas]
9 Hb_003001_020 0.3437802908 - - hypothetical protein JCGZ_17508 [Jatropha curcas]
10 Hb_007904_240 0.3444338841 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
11 Hb_080749_010 0.3456476563 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
12 Hb_000917_170 0.3491689133 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
13 Hb_000878_140 0.3493664881 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
14 Hb_004931_110 0.3536987418 - - inorganic phosphate transporter, putative [Ricinus communis]
15 Hb_002849_140 0.3556299113 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
16 Hb_004920_070 0.3588986354 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_004965_050 0.3615850215 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
18 Hb_005375_050 0.3640352839 - - inorganic pyrophosphatase, putative [Ricinus communis]
19 Hb_044653_080 0.3649060013 - - Uncharacterized protein TCM_045144 [Theobroma cacao]
20 Hb_004109_070 0.3670586499 - - hypothetical protein PRUPE_ppa010934mg [Prunus persica]

Gene co-expression network

sample Hb_012753_220 Hb_012753_220 Hb_000599_320 Hb_000599_320 Hb_012753_220--Hb_000599_320 Hb_128486_010 Hb_128486_010 Hb_012753_220--Hb_128486_010 Hb_000352_200 Hb_000352_200 Hb_012753_220--Hb_000352_200 Hb_007904_250 Hb_007904_250 Hb_012753_220--Hb_007904_250 Hb_000008_380 Hb_000008_380 Hb_012753_220--Hb_000008_380 Hb_000703_040 Hb_000703_040 Hb_012753_220--Hb_000703_040 Hb_000025_170 Hb_000025_170 Hb_000599_320--Hb_000025_170 Hb_000599_320--Hb_000008_380 Hb_000878_140 Hb_000878_140 Hb_000599_320--Hb_000878_140 Hb_000599_320--Hb_000703_040 Hb_001818_030 Hb_001818_030 Hb_000599_320--Hb_001818_030 Hb_003633_100 Hb_003633_100 Hb_128486_010--Hb_003633_100 Hb_031822_010 Hb_031822_010 Hb_128486_010--Hb_031822_010 Hb_089140_110 Hb_089140_110 Hb_128486_010--Hb_089140_110 Hb_000072_190 Hb_000072_190 Hb_128486_010--Hb_000072_190 Hb_128486_010--Hb_000352_200 Hb_000020_100 Hb_000020_100 Hb_128486_010--Hb_000020_100 Hb_002309_050 Hb_002309_050 Hb_000352_200--Hb_002309_050 Hb_000189_540 Hb_000189_540 Hb_000352_200--Hb_000189_540 Hb_000152_210 Hb_000152_210 Hb_000352_200--Hb_000152_210 Hb_000155_090 Hb_000155_090 Hb_000352_200--Hb_000155_090 Hb_052764_070 Hb_052764_070 Hb_000352_200--Hb_052764_070 Hb_004787_040 Hb_004787_040 Hb_000352_200--Hb_004787_040 Hb_004453_100 Hb_004453_100 Hb_007904_250--Hb_004453_100 Hb_000010_300 Hb_000010_300 Hb_007904_250--Hb_000010_300 Hb_001214_190 Hb_001214_190 Hb_007904_250--Hb_001214_190 Hb_143813_020 Hb_143813_020 Hb_007904_250--Hb_143813_020 Hb_004193_010 Hb_004193_010 Hb_007904_250--Hb_004193_010 Hb_008173_060 Hb_008173_060 Hb_007904_250--Hb_008173_060 Hb_000008_380--Hb_000878_140 Hb_000008_380--Hb_000155_090 Hb_014720_010 Hb_014720_010 Hb_000008_380--Hb_014720_010 Hb_005375_050 Hb_005375_050 Hb_000008_380--Hb_005375_050 Hb_000130_450 Hb_000130_450 Hb_000008_380--Hb_000130_450 Hb_011512_160 Hb_011512_160 Hb_000008_380--Hb_011512_160 Hb_002259_190 Hb_002259_190 Hb_000703_040--Hb_002259_190 Hb_004324_160 Hb_004324_160 Hb_000703_040--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_000703_040--Hb_000321_130 Hb_000917_170 Hb_000917_170 Hb_000703_040--Hb_000917_170 Hb_054865_070 Hb_054865_070 Hb_000703_040--Hb_054865_070 Hb_000703_040--Hb_014720_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.12792 0.361987 0.209076 0 0.0447188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.274804 0.315591 0 0

CAGE analysis