Hb_000388_030

Information

Type -
Description -
Location Contig388: 26781-28239
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14440g
description hypothetical protein
nr
ID KDP33162.1
description hypothetical protein JCGZ_13427 [Jatropha curcas]
swissprot
ID Q8RWE8
description GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1
trembl
ID A0A067KAI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13427 PE=4 SV=1
Gene Ontology
ID GO:0080048
description gdp-l-galactose phosphorylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_030 0.0 - - hypothetical protein JCGZ_13427 [Jatropha curcas]
2 Hb_000061_200 0.3177272347 - - nitrate transporter, putative [Ricinus communis]
3 Hb_004324_160 0.3210205513 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_002259_190 0.3393353958 - - Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]
5 Hb_006726_010 0.3431112198 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
6 Hb_000321_130 0.3448494604 - - Alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_054865_070 0.3516231456 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
8 Hb_010519_030 0.3535783966 - - -
9 Hb_000703_040 0.3545238919 - - hypothetical protein RCOM_1177160 [Ricinus communis]
10 Hb_007547_020 0.3711962877 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
11 Hb_014720_010 0.3758754009 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000130_450 0.3883875872 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011671_170 0.3936663288 - - PREDICTED: protein DYAD [Jatropha curcas]
14 Hb_012338_020 0.4007676696 - - -
15 Hb_003688_080 0.4043695894 - - -
16 Hb_000661_210 0.4137620295 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004129_160 0.418403418 - - small heat-shock protein, putative [Ricinus communis]
18 Hb_000027_040 0.4209289626 - - PREDICTED: uncharacterized protein LOC105636980 [Jatropha curcas]
19 Hb_001008_140 0.4283891263 - - -
20 Hb_006671_020 0.4288298124 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000388_030 Hb_000388_030 Hb_000061_200 Hb_000061_200 Hb_000388_030--Hb_000061_200 Hb_004324_160 Hb_004324_160 Hb_000388_030--Hb_004324_160 Hb_002259_190 Hb_002259_190 Hb_000388_030--Hb_002259_190 Hb_006726_010 Hb_006726_010 Hb_000388_030--Hb_006726_010 Hb_000321_130 Hb_000321_130 Hb_000388_030--Hb_000321_130 Hb_054865_070 Hb_054865_070 Hb_000388_030--Hb_054865_070 Hb_000061_200--Hb_006726_010 Hb_000027_040 Hb_000027_040 Hb_000061_200--Hb_000027_040 Hb_000389_190 Hb_000389_190 Hb_000061_200--Hb_000389_190 Hb_004453_100 Hb_004453_100 Hb_000061_200--Hb_004453_100 Hb_000712_050 Hb_000712_050 Hb_000061_200--Hb_000712_050 Hb_004324_160--Hb_000321_130 Hb_007547_020 Hb_007547_020 Hb_004324_160--Hb_007547_020 Hb_004324_160--Hb_002259_190 Hb_000703_040 Hb_000703_040 Hb_004324_160--Hb_000703_040 Hb_012338_020 Hb_012338_020 Hb_004324_160--Hb_012338_020 Hb_004324_160--Hb_054865_070 Hb_002259_190--Hb_054865_070 Hb_002259_190--Hb_000703_040 Hb_002259_190--Hb_000321_130 Hb_010519_030 Hb_010519_030 Hb_002259_190--Hb_010519_030 Hb_001214_080 Hb_001214_080 Hb_002259_190--Hb_001214_080 Hb_007904_240 Hb_007904_240 Hb_006726_010--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_006726_010--Hb_000069_770 Hb_021576_020 Hb_021576_020 Hb_006726_010--Hb_021576_020 Hb_000599_320 Hb_000599_320 Hb_006726_010--Hb_000599_320 Hb_000321_130--Hb_007547_020 Hb_000321_130--Hb_000703_040 Hb_000321_130--Hb_012338_020 Hb_000321_130--Hb_054865_070 Hb_004129_160 Hb_004129_160 Hb_054865_070--Hb_004129_160 Hb_054865_070--Hb_000703_040 Hb_054865_070--Hb_010519_030 Hb_054865_070--Hb_001214_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0730102 0 0.0375078 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.100866 0.0624029 0.0134798 0

CAGE analysis