Hb_002157_200

Information

Type -
Description -
Location Contig2157: 112500-117943
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21630g
description POPTRDRAFT_751663; hypothetical protein
nr
ID CAN67129.1
description hypothetical protein VITISV_040170 [Vitis vinifera]
swissprot
ID Q7Y201
description Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2
trembl
ID A5ATJ7
description Pectinesterase OS=Vitis vinifera GN=VITISV_040170 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_200 0.0 - - hypothetical protein VITISV_040170 [Vitis vinifera]
2 Hb_003897_020 0.2787260744 transcription factor TF Family: Orphans transcription factor, putative [Ricinus communis]
3 Hb_003605_140 0.2962935873 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001049_080 0.297881887 - - -
5 Hb_000392_200 0.3004647399 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
6 Hb_000010_450 0.3125420243 - - purine permease, putative [Ricinus communis]
7 Hb_010515_030 0.318614858 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
8 Hb_000679_120 0.3228523624 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
9 Hb_007632_150 0.323412778 - - conserved hypothetical protein [Ricinus communis]
10 Hb_023226_050 0.3261199707 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
11 Hb_086922_010 0.3301396254 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
12 Hb_002382_020 0.3353921826 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
13 Hb_001913_020 0.3370532308 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003861_030 0.3393190315 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
15 Hb_003581_180 0.3396688324 - - Pectate lyase precursor, putative [Ricinus communis]
16 Hb_003638_060 0.3617551367 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
17 Hb_004324_230 0.3634023044 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
18 Hb_008948_090 0.3680646798 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_135811_030 0.3700415359 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_069877_010 0.372617956 - - chaperone protein DNAj, putative [Ricinus communis]

Gene co-expression network

sample Hb_002157_200 Hb_002157_200 Hb_003897_020 Hb_003897_020 Hb_002157_200--Hb_003897_020 Hb_003605_140 Hb_003605_140 Hb_002157_200--Hb_003605_140 Hb_001049_080 Hb_001049_080 Hb_002157_200--Hb_001049_080 Hb_000392_200 Hb_000392_200 Hb_002157_200--Hb_000392_200 Hb_000010_450 Hb_000010_450 Hb_002157_200--Hb_000010_450 Hb_010515_030 Hb_010515_030 Hb_002157_200--Hb_010515_030 Hb_000679_120 Hb_000679_120 Hb_003897_020--Hb_000679_120 Hb_086922_010 Hb_086922_010 Hb_003897_020--Hb_086922_010 Hb_007632_150 Hb_007632_150 Hb_003897_020--Hb_007632_150 Hb_005725_200 Hb_005725_200 Hb_003897_020--Hb_005725_200 Hb_135811_030 Hb_135811_030 Hb_003897_020--Hb_135811_030 Hb_162304_010 Hb_162304_010 Hb_003605_140--Hb_162304_010 Hb_005015_040 Hb_005015_040 Hb_003605_140--Hb_005015_040 Hb_000165_270 Hb_000165_270 Hb_003605_140--Hb_000165_270 Hb_003605_140--Hb_000010_450 Hb_136620_010 Hb_136620_010 Hb_003605_140--Hb_136620_010 Hb_000206_080 Hb_000206_080 Hb_003605_140--Hb_000206_080 Hb_001049_080--Hb_000392_200 Hb_001049_080--Hb_007632_150 Hb_001049_080--Hb_086922_010 Hb_023226_050 Hb_023226_050 Hb_001049_080--Hb_023226_050 Hb_001049_080--Hb_135811_030 Hb_069877_010 Hb_069877_010 Hb_001049_080--Hb_069877_010 Hb_000392_200--Hb_023226_050 Hb_000392_200--Hb_007632_150 Hb_000392_200--Hb_086922_010 Hb_000392_200--Hb_162304_010 Hb_000006_020 Hb_000006_020 Hb_000392_200--Hb_000006_020 Hb_004324_230 Hb_004324_230 Hb_000010_450--Hb_004324_230 Hb_004228_060 Hb_004228_060 Hb_000010_450--Hb_004228_060 Hb_003638_060 Hb_003638_060 Hb_000010_450--Hb_003638_060 Hb_000592_120 Hb_000592_120 Hb_000010_450--Hb_000592_120 Hb_078641_020 Hb_078641_020 Hb_000010_450--Hb_078641_020 Hb_079751_010 Hb_079751_010 Hb_010515_030--Hb_079751_010 Hb_001221_280 Hb_001221_280 Hb_010515_030--Hb_001221_280 Hb_000856_160 Hb_000856_160 Hb_010515_030--Hb_000856_160 Hb_000215_370 Hb_000215_370 Hb_010515_030--Hb_000215_370 Hb_005656_030 Hb_005656_030 Hb_010515_030--Hb_005656_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019263 0 0.109393 0 0 0.00519714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0203317 0 0

CAGE analysis