Hb_004228_060

Information

Type -
Description -
Location Contig4228: 61202-61849
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27950g
description hypothetical protein
nr
ID EMS63710.1
description Tubulin beta-2 chain [Triticum urartu]
swissprot
ID P25862
description Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1
trembl
ID M1A496
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005671 PE=4 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41851: 61239-61828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004228_060 0.0 - - Tubulin beta-2 chain [Triticum urartu]
2 Hb_004324_230 0.0788799907 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
3 Hb_002843_200 0.1585928635 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000010_450 0.1749629303 - - purine permease, putative [Ricinus communis]
5 Hb_182291_010 0.1871063218 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
6 Hb_002049_040 0.1871064633 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
7 Hb_004598_010 0.1871134019 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
8 Hb_001372_010 0.1871166095 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_006953_010 0.1871236748 - - cytochrome P450, putative [Ricinus communis]
10 Hb_001171_020 0.1871725536 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
11 Hb_107495_020 0.1871821969 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
12 Hb_001536_070 0.1872044929 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
13 Hb_000265_040 0.187208207 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
14 Hb_075653_010 0.1873800758 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
15 Hb_000514_010 0.1873898694 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
16 Hb_002305_040 0.1874343112 - - TMV resistance protein N, putative [Ricinus communis]
17 Hb_000592_120 0.1875439759 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
18 Hb_004228_050 0.1878405692 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
19 Hb_000592_150 0.1879238929 - - Os05g0413200 [Oryza sativa Japonica Group]
20 Hb_004722_050 0.188270823 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]

Gene co-expression network

sample Hb_004228_060 Hb_004228_060 Hb_004324_230 Hb_004324_230 Hb_004228_060--Hb_004324_230 Hb_002843_200 Hb_002843_200 Hb_004228_060--Hb_002843_200 Hb_000010_450 Hb_000010_450 Hb_004228_060--Hb_000010_450 Hb_182291_010 Hb_182291_010 Hb_004228_060--Hb_182291_010 Hb_002049_040 Hb_002049_040 Hb_004228_060--Hb_002049_040 Hb_004598_010 Hb_004598_010 Hb_004228_060--Hb_004598_010 Hb_004324_230--Hb_000010_450 Hb_000592_120 Hb_000592_120 Hb_004324_230--Hb_000592_120 Hb_004324_230--Hb_002843_200 Hb_000212_170 Hb_000212_170 Hb_004324_230--Hb_000212_170 Hb_003638_060 Hb_003638_060 Hb_004324_230--Hb_003638_060 Hb_002026_040 Hb_002026_040 Hb_002843_200--Hb_002026_040 Hb_013849_010 Hb_013849_010 Hb_002843_200--Hb_013849_010 Hb_000155_280 Hb_000155_280 Hb_002843_200--Hb_000155_280 Hb_000227_010 Hb_000227_010 Hb_002843_200--Hb_000227_010 Hb_006485_020 Hb_006485_020 Hb_002843_200--Hb_006485_020 Hb_007816_010 Hb_007816_010 Hb_002843_200--Hb_007816_010 Hb_000010_450--Hb_003638_060 Hb_000010_450--Hb_000592_120 Hb_003605_140 Hb_003605_140 Hb_000010_450--Hb_003605_140 Hb_078641_020 Hb_078641_020 Hb_000010_450--Hb_078641_020 Hb_182291_010--Hb_002049_040 Hb_182291_010--Hb_004598_010 Hb_001372_010 Hb_001372_010 Hb_182291_010--Hb_001372_010 Hb_006953_010 Hb_006953_010 Hb_182291_010--Hb_006953_010 Hb_001171_020 Hb_001171_020 Hb_182291_010--Hb_001171_020 Hb_107495_020 Hb_107495_020 Hb_182291_010--Hb_107495_020 Hb_002049_040--Hb_006953_010 Hb_002049_040--Hb_004598_010 Hb_002049_040--Hb_001372_010 Hb_002049_040--Hb_107495_020 Hb_001536_070 Hb_001536_070 Hb_002049_040--Hb_001536_070 Hb_004598_010--Hb_001372_010 Hb_004598_010--Hb_001171_020 Hb_004598_010--Hb_006953_010 Hb_004598_010--Hb_107495_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.48571 0.225227 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.125376 0 0

CAGE analysis