Hb_078641_020

Information

Type -
Description -
Location Contig78641: 20284-25855
Sequence    

Annotation

kegg
ID rcu:RCOM_1541960
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_002515774.1
description Pectinesterase-2 precursor, putative [Ricinus communis]
swissprot
ID Q94CB1
description Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1
trembl
ID B9RPV5
description Pectinesterase OS=Ricinus communis GN=RCOM_1541960 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58112: 20849-25827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078641_020 0.0 - - Pectinesterase-2 precursor, putative [Ricinus communis]
2 Hb_162008_030 0.0654491792 - - cytochrome p450 [Ageratina adenophora]
3 Hb_000129_060 0.0670240224 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
4 Hb_004019_130 0.068500192 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
5 Hb_149407_010 0.0706710873 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
6 Hb_029879_040 0.0737677446 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
7 Hb_002028_230 0.0758705745 - - Pectinesterase-3 precursor, putative [Ricinus communis]
8 Hb_000212_170 0.0835747354 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
9 Hb_001546_100 0.0848540301 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
10 Hb_121680_010 0.0858318145 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
11 Hb_162008_040 0.0869874511 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
12 Hb_002030_140 0.0887908054 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
13 Hb_022929_010 0.0897629129 - - zinc/iron transporter, putative [Ricinus communis]
14 Hb_000680_080 0.0900957898 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
15 Hb_012573_060 0.0927980465 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
16 Hb_003411_080 0.0937762664 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000592_120 0.0944988532 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
18 Hb_000077_430 0.0964483534 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
19 Hb_000753_220 0.1008768355 - - hypothetical protein RCOM_1467930 [Ricinus communis]
20 Hb_003398_110 0.1037786106 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]

Gene co-expression network

sample Hb_078641_020 Hb_078641_020 Hb_162008_030 Hb_162008_030 Hb_078641_020--Hb_162008_030 Hb_000129_060 Hb_000129_060 Hb_078641_020--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_078641_020--Hb_004019_130 Hb_149407_010 Hb_149407_010 Hb_078641_020--Hb_149407_010 Hb_029879_040 Hb_029879_040 Hb_078641_020--Hb_029879_040 Hb_002028_230 Hb_002028_230 Hb_078641_020--Hb_002028_230 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_162008_030--Hb_149407_010 Hb_162008_030--Hb_029879_040 Hb_162008_030--Hb_002028_230 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100 Hb_000129_060--Hb_004019_130 Hb_000129_060--Hb_029879_040 Hb_000129_060--Hb_001546_100 Hb_000129_060--Hb_002028_230 Hb_000129_060--Hb_149407_010 Hb_004019_130--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_004019_130--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_004019_130--Hb_022929_010 Hb_004019_130--Hb_029879_040 Hb_149407_010--Hb_029879_040 Hb_149407_010--Hb_004019_130 Hb_149407_010--Hb_002028_230 Hb_003411_080 Hb_003411_080 Hb_149407_010--Hb_003411_080 Hb_029879_040--Hb_002028_230 Hb_000077_430 Hb_000077_430 Hb_029879_040--Hb_000077_430 Hb_002028_230--Hb_003411_080 Hb_002028_230--Hb_004019_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0448295 0 9.60946 0.325192 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0406439 0 0

CAGE analysis