Hb_003638_060

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3638: 105269-106718
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13050g
description POPTRDRAFT_757541; hypothetical protein
nr
ID XP_012086850.1
description PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
swissprot
ID Q9SK53
description Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1
trembl
ID A0A067JN38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20562 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_060 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
2 Hb_004324_230 0.1621709417 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
3 Hb_000010_450 0.178744911 - - purine permease, putative [Ricinus communis]
4 Hb_010916_010 0.1900519046 - - terpene synthase [Populus trichocarpa]
5 Hb_000592_120 0.2021485418 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
6 Hb_004228_060 0.207529059 - - Tubulin beta-2 chain [Triticum urartu]
7 Hb_078641_020 0.2095816579 - - Pectinesterase-2 precursor, putative [Ricinus communis]
8 Hb_007218_010 0.2168482509 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
9 Hb_008453_120 0.2183083454 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
10 Hb_000212_170 0.2229001123 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
11 Hb_162008_030 0.2253238415 - - cytochrome p450 [Ageratina adenophora]
12 Hb_000129_060 0.2257258101 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
13 Hb_004019_130 0.2261338362 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
14 Hb_162008_040 0.2264634394 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
15 Hb_149407_010 0.2268805042 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
16 Hb_029879_040 0.2277129176 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
17 Hb_002028_230 0.2283408143 - - Pectinesterase-3 precursor, putative [Ricinus communis]
18 Hb_001546_100 0.2312595059 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
19 Hb_121680_010 0.2315867287 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
20 Hb_002030_140 0.2326418882 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003638_060 Hb_003638_060 Hb_004324_230 Hb_004324_230 Hb_003638_060--Hb_004324_230 Hb_000010_450 Hb_000010_450 Hb_003638_060--Hb_000010_450 Hb_010916_010 Hb_010916_010 Hb_003638_060--Hb_010916_010 Hb_000592_120 Hb_000592_120 Hb_003638_060--Hb_000592_120 Hb_004228_060 Hb_004228_060 Hb_003638_060--Hb_004228_060 Hb_078641_020 Hb_078641_020 Hb_003638_060--Hb_078641_020 Hb_004324_230--Hb_004228_060 Hb_004324_230--Hb_000010_450 Hb_004324_230--Hb_000592_120 Hb_002843_200 Hb_002843_200 Hb_004324_230--Hb_002843_200 Hb_000212_170 Hb_000212_170 Hb_004324_230--Hb_000212_170 Hb_000010_450--Hb_004228_060 Hb_000010_450--Hb_000592_120 Hb_003605_140 Hb_003605_140 Hb_000010_450--Hb_003605_140 Hb_000010_450--Hb_078641_020 Hb_003147_020 Hb_003147_020 Hb_010916_010--Hb_003147_020 Hb_149407_010 Hb_149407_010 Hb_010916_010--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_010916_010--Hb_162008_030 Hb_007218_010 Hb_007218_010 Hb_010916_010--Hb_007218_010 Hb_029879_040 Hb_029879_040 Hb_010916_010--Hb_029879_040 Hb_000129_060 Hb_000129_060 Hb_010916_010--Hb_000129_060 Hb_000592_120--Hb_000212_170 Hb_162008_040 Hb_162008_040 Hb_000592_120--Hb_162008_040 Hb_121680_010 Hb_121680_010 Hb_000592_120--Hb_121680_010 Hb_008252_010 Hb_008252_010 Hb_000592_120--Hb_008252_010 Hb_162008_020 Hb_162008_020 Hb_000592_120--Hb_162008_020 Hb_000077_430 Hb_000077_430 Hb_000592_120--Hb_000077_430 Hb_004228_060--Hb_002843_200 Hb_182291_010 Hb_182291_010 Hb_004228_060--Hb_182291_010 Hb_002049_040 Hb_002049_040 Hb_004228_060--Hb_002049_040 Hb_004598_010 Hb_004598_010 Hb_004228_060--Hb_004598_010 Hb_078641_020--Hb_162008_030 Hb_078641_020--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_078641_020--Hb_004019_130 Hb_078641_020--Hb_149407_010 Hb_078641_020--Hb_029879_040 Hb_002028_230 Hb_002028_230 Hb_078641_020--Hb_002028_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.0497 0.0357743 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0480434 0 0.0697447 0 0

CAGE analysis