Hb_010916_010

Information

Type -
Description -
Location Contig10916: 56404-62344
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02920g
description POPTRDRAFT_763927; hypothetical protein
nr
ID AII32470.1
description terpene synthase [Populus trichocarpa]
swissprot
ID B9T825
description Probable terpene synthase 12 OS=Ricinus communis GN=TPS12 PE=3 SV=1
trembl
ID A0A076GAR5
description Terpene synthase OS=Populus trichocarpa GN=TPS6 PE=2 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02795: 56597-57745 , PASA_asmbl_02796: 59216-59532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010916_010 0.0 - - terpene synthase [Populus trichocarpa]
2 Hb_003147_020 0.1318300926 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
3 Hb_149407_010 0.1396901913 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
4 Hb_162008_030 0.1433935308 - - cytochrome p450 [Ageratina adenophora]
5 Hb_007218_010 0.1442159474 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
6 Hb_029879_040 0.1469842648 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
7 Hb_000129_060 0.1481862283 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
8 Hb_002028_230 0.149750239 - - Pectinesterase-3 precursor, putative [Ricinus communis]
9 Hb_004019_130 0.1501781477 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
10 Hb_003411_080 0.1533719643 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008453_120 0.1571186089 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
12 Hb_078641_020 0.1577155701 - - Pectinesterase-2 precursor, putative [Ricinus communis]
13 Hb_121680_010 0.1584286442 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
14 Hb_003398_110 0.1619947701 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
15 Hb_032223_010 0.1626093789 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
16 Hb_001546_100 0.1652181617 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
17 Hb_000753_220 0.1665044478 - - hypothetical protein RCOM_1467930 [Ricinus communis]
18 Hb_002030_140 0.1684075045 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
19 Hb_022929_010 0.1691879886 - - zinc/iron transporter, putative [Ricinus communis]
20 Hb_000680_080 0.1694547449 - - PREDICTED: protein HOTHEAD [Jatropha curcas]

Gene co-expression network

sample Hb_010916_010 Hb_010916_010 Hb_003147_020 Hb_003147_020 Hb_010916_010--Hb_003147_020 Hb_149407_010 Hb_149407_010 Hb_010916_010--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_010916_010--Hb_162008_030 Hb_007218_010 Hb_007218_010 Hb_010916_010--Hb_007218_010 Hb_029879_040 Hb_029879_040 Hb_010916_010--Hb_029879_040 Hb_000129_060 Hb_000129_060 Hb_010916_010--Hb_000129_060 Hb_003411_080 Hb_003411_080 Hb_003147_020--Hb_003411_080 Hb_003147_020--Hb_149407_010 Hb_002028_230 Hb_002028_230 Hb_003147_020--Hb_002028_230 Hb_003147_020--Hb_162008_030 Hb_003147_020--Hb_029879_040 Hb_003147_020--Hb_000129_060 Hb_149407_010--Hb_162008_030 Hb_149407_010--Hb_029879_040 Hb_149407_010--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_149407_010--Hb_004019_130 Hb_149407_010--Hb_002028_230 Hb_149407_010--Hb_003411_080 Hb_162008_030--Hb_000129_060 Hb_162008_030--Hb_004019_130 Hb_162008_030--Hb_029879_040 Hb_162008_030--Hb_002028_230 Hb_001546_100 Hb_001546_100 Hb_162008_030--Hb_001546_100 Hb_005854_060 Hb_005854_060 Hb_007218_010--Hb_005854_060 Hb_162008_040 Hb_162008_040 Hb_007218_010--Hb_162008_040 Hb_007157_050 Hb_007157_050 Hb_007218_010--Hb_007157_050 Hb_121680_010 Hb_121680_010 Hb_007218_010--Hb_121680_010 Hb_007218_010--Hb_001546_100 Hb_002030_140 Hb_002030_140 Hb_007218_010--Hb_002030_140 Hb_029879_040--Hb_000129_060 Hb_029879_040--Hb_004019_130 Hb_029879_040--Hb_002028_230 Hb_000077_430 Hb_000077_430 Hb_029879_040--Hb_000077_430 Hb_000129_060--Hb_004019_130 Hb_000129_060--Hb_001546_100 Hb_000129_060--Hb_002028_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.813863 0.0159096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251645 0 0 0.00788485 0

CAGE analysis