Hb_000110_390

Information

Type -
Description -
Location Contig110: 430138-430563
Sequence    

Annotation

kegg
ID pmum:103338992
description uncharacterized LOC103338992
nr
ID XP_008240491.1
description PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
swissprot
ID -
description -
trembl
ID B9SLC1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0626230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_390 0.0 - - PREDICTED: uncharacterized protein LOC103338992 [Prunus mume]
2 Hb_168319_020 0.1872121683 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010377_020 0.1939420469 - - -
4 Hb_001268_320 0.2198209736 - - PREDICTED: uncharacterized protein LOC104887816 [Beta vulgaris subsp. vulgaris]
5 Hb_001242_010 0.2362430092 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
6 Hb_002092_030 0.2399684934 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
7 Hb_001894_180 0.2602902597 - - galactinol synthase [Manihot esculenta]
8 Hb_020712_050 0.2638677786 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
9 Hb_000563_620 0.289084693 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
10 Hb_006326_020 0.2943011914 - - -
11 Hb_060236_010 0.3014665441 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
12 Hb_004241_050 0.3080714375 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
13 Hb_007007_020 0.3089235686 - - conserved hypothetical protein [Ricinus communis]
14 Hb_041063_010 0.3101321936 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_001115_010 0.312210034 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
16 Hb_001329_030 0.31336155 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000046_250 0.3147100605 - - conserved hypothetical protein [Ricinus communis]
18 Hb_082733_010 0.314808484 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
19 Hb_137350_010 0.3172874118 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
20 Hb_003360_050 0.3188300373 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000110_390 Hb_000110_390 Hb_168319_020 Hb_168319_020 Hb_000110_390--Hb_168319_020 Hb_010377_020 Hb_010377_020 Hb_000110_390--Hb_010377_020 Hb_001268_320 Hb_001268_320 Hb_000110_390--Hb_001268_320 Hb_001242_010 Hb_001242_010 Hb_000110_390--Hb_001242_010 Hb_002092_030 Hb_002092_030 Hb_000110_390--Hb_002092_030 Hb_001894_180 Hb_001894_180 Hb_000110_390--Hb_001894_180 Hb_168319_020--Hb_001894_180 Hb_009010_040 Hb_009010_040 Hb_168319_020--Hb_009010_040 Hb_003360_050 Hb_003360_050 Hb_168319_020--Hb_003360_050 Hb_153774_010 Hb_153774_010 Hb_168319_020--Hb_153774_010 Hb_050229_030 Hb_050229_030 Hb_168319_020--Hb_050229_030 Hb_010377_020--Hb_001268_320 Hb_010377_020--Hb_002092_030 Hb_010377_020--Hb_001242_010 Hb_010377_020--Hb_001894_180 Hb_001329_030 Hb_001329_030 Hb_010377_020--Hb_001329_030 Hb_001268_320--Hb_002092_030 Hb_001268_320--Hb_001242_010 Hb_001268_320--Hb_001894_180 Hb_001804_030 Hb_001804_030 Hb_001268_320--Hb_001804_030 Hb_092995_020 Hb_092995_020 Hb_001242_010--Hb_092995_020 Hb_003050_030 Hb_003050_030 Hb_001242_010--Hb_003050_030 Hb_020712_050 Hb_020712_050 Hb_001242_010--Hb_020712_050 Hb_004631_030 Hb_004631_030 Hb_002092_030--Hb_004631_030 Hb_002374_060 Hb_002374_060 Hb_002092_030--Hb_002374_060 Hb_000956_060 Hb_000956_060 Hb_002092_030--Hb_000956_060 Hb_010162_010 Hb_010162_010 Hb_002092_030--Hb_010162_010 Hb_000297_220 Hb_000297_220 Hb_002092_030--Hb_000297_220 Hb_000398_050 Hb_000398_050 Hb_001894_180--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_001894_180--Hb_000028_500 Hb_126711_010 Hb_126711_010 Hb_001894_180--Hb_126711_010 Hb_001894_180--Hb_001329_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0652748 0 0.89526 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.226786 0.294766 0

CAGE analysis