Hb_001163_140

Information

Type -
Description -
Location Contig1163: 119717-122067
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_140 0.0 - - -
2 Hb_012565_010 0.231134344 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
3 Hb_002193_070 0.2412556082 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000003_850 0.2494508866 - - PREDICTED: uncharacterized protein LOC105633597 [Jatropha curcas]
5 Hb_000042_180 0.260081428 - - -
6 Hb_001157_210 0.2685762823 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
7 Hb_002675_170 0.2726812144 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
8 Hb_001741_110 0.2726976086 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
9 Hb_001153_070 0.2857835181 - - -
10 Hb_000532_090 0.2858263378 - - ATPase [delta proteobacterium MLMS-1]
11 Hb_007311_050 0.2978786913 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000087_010 0.2997878938 - - mta/sah nucleosidase, putative [Ricinus communis]
13 Hb_011900_040 0.3001808173 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
14 Hb_011169_010 0.3013375277 - - mta/sah nucleosidase, putative [Ricinus communis]
15 Hb_002192_040 0.3031994924 - - -
16 Hb_003360_050 0.3046783688 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000345_060 0.3048264633 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
18 Hb_000579_160 0.305951155 - - PREDICTED: uncharacterized protein LOC104216549 isoform X1 [Nicotiana sylvestris]
19 Hb_109187_010 0.3061226831 - - PREDICTED: serine/threonine-protein kinase CDL1 [Cucumis sativus]
20 Hb_009010_040 0.3109800474 - - Peptide transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001163_140 Hb_001163_140 Hb_012565_010 Hb_012565_010 Hb_001163_140--Hb_012565_010 Hb_002193_070 Hb_002193_070 Hb_001163_140--Hb_002193_070 Hb_000003_850 Hb_000003_850 Hb_001163_140--Hb_000003_850 Hb_000042_180 Hb_000042_180 Hb_001163_140--Hb_000042_180 Hb_001157_210 Hb_001157_210 Hb_001163_140--Hb_001157_210 Hb_002675_170 Hb_002675_170 Hb_001163_140--Hb_002675_170 Hb_012565_010--Hb_002675_170 Hb_012565_010--Hb_002193_070 Hb_011900_040 Hb_011900_040 Hb_012565_010--Hb_011900_040 Hb_011169_010 Hb_011169_010 Hb_012565_010--Hb_011169_010 Hb_005455_100 Hb_005455_100 Hb_012565_010--Hb_005455_100 Hb_000617_300 Hb_000617_300 Hb_012565_010--Hb_000617_300 Hb_009010_040 Hb_009010_040 Hb_002193_070--Hb_009010_040 Hb_002193_070--Hb_002675_170 Hb_003360_050 Hb_003360_050 Hb_002193_070--Hb_003360_050 Hb_002193_070--Hb_011900_040 Hb_001335_040 Hb_001335_040 Hb_002193_070--Hb_001335_040 Hb_020712_050 Hb_020712_050 Hb_000003_850--Hb_020712_050 Hb_000003_850--Hb_000042_180 Hb_003058_250 Hb_003058_250 Hb_000003_850--Hb_003058_250 Hb_002793_080 Hb_002793_080 Hb_000003_850--Hb_002793_080 Hb_051055_010 Hb_051055_010 Hb_000003_850--Hb_051055_010 Hb_000042_180--Hb_003360_050 Hb_000042_180--Hb_002793_080 Hb_000733_150 Hb_000733_150 Hb_000042_180--Hb_000733_150 Hb_001998_100 Hb_001998_100 Hb_000042_180--Hb_001998_100 Hb_000042_180--Hb_002193_070 Hb_003014_010 Hb_003014_010 Hb_000042_180--Hb_003014_010 Hb_001153_070 Hb_001153_070 Hb_001157_210--Hb_001153_070 Hb_001157_210--Hb_012565_010 Hb_001157_210--Hb_000617_300 Hb_000087_010 Hb_000087_010 Hb_001157_210--Hb_000087_010 Hb_001157_210--Hb_011169_010 Hb_000345_060 Hb_000345_060 Hb_001157_210--Hb_000345_060 Hb_002675_170--Hb_011900_040 Hb_002675_170--Hb_005455_100 Hb_002675_170--Hb_001335_040 Hb_010833_010 Hb_010833_010 Hb_002675_170--Hb_010833_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0839798 0 0 1.10397 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.028735 0.161052 0 0.0597467

CAGE analysis