Hb_001153_070

Information

Type -
Description -
Location Contig1153: 23993-24558
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_070 0.0 - - -
2 Hb_001157_210 0.1680667829 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
3 Hb_003411_120 0.1886143751 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
4 Hb_091537_010 0.1949752422 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_001102_310 0.205500196 - - Protein AFR, putative [Ricinus communis]
6 Hb_029508_020 0.2093833673 - - -
7 Hb_000541_030 0.2095865387 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003540_180 0.216938943 - - -
9 Hb_011900_040 0.2252250992 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
10 Hb_005455_100 0.2294873217 - - amino acid transporter, putative [Ricinus communis]
11 Hb_001097_080 0.2297811205 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
12 Hb_012565_010 0.2300201539 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
13 Hb_000617_300 0.2324491162 - - RALFL33, putative [Ricinus communis]
14 Hb_147137_010 0.2339811622 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
15 Hb_017862_040 0.2352779175 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
16 Hb_002150_100 0.2357662115 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Jatropha curcas]
17 Hb_000347_210 0.2365228646 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
18 Hb_016734_050 0.2377197158 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
19 Hb_001628_040 0.2377584847 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
20 Hb_000331_660 0.2479379512 - - PREDICTED: vignain [Jatropha curcas]

Gene co-expression network

sample Hb_001153_070 Hb_001153_070 Hb_001157_210 Hb_001157_210 Hb_001153_070--Hb_001157_210 Hb_003411_120 Hb_003411_120 Hb_001153_070--Hb_003411_120 Hb_091537_010 Hb_091537_010 Hb_001153_070--Hb_091537_010 Hb_001102_310 Hb_001102_310 Hb_001153_070--Hb_001102_310 Hb_029508_020 Hb_029508_020 Hb_001153_070--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_001153_070--Hb_000541_030 Hb_012565_010 Hb_012565_010 Hb_001157_210--Hb_012565_010 Hb_000617_300 Hb_000617_300 Hb_001157_210--Hb_000617_300 Hb_000087_010 Hb_000087_010 Hb_001157_210--Hb_000087_010 Hb_011169_010 Hb_011169_010 Hb_001157_210--Hb_011169_010 Hb_000345_060 Hb_000345_060 Hb_001157_210--Hb_000345_060 Hb_001097_080 Hb_001097_080 Hb_003411_120--Hb_001097_080 Hb_003411_120--Hb_000617_300 Hb_147137_010 Hb_147137_010 Hb_003411_120--Hb_147137_010 Hb_003371_030 Hb_003371_030 Hb_003411_120--Hb_003371_030 Hb_005914_130 Hb_005914_130 Hb_003411_120--Hb_005914_130 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020 Hb_091537_010--Hb_001102_310 Hb_091537_010--Hb_029508_020 Hb_091537_010--Hb_000541_030 Hb_000347_210 Hb_000347_210 Hb_091537_010--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_091537_010--Hb_119808_020 Hb_003540_180 Hb_003540_180 Hb_091537_010--Hb_003540_180 Hb_002367_030 Hb_002367_030 Hb_001102_310--Hb_002367_030 Hb_001102_310--Hb_003540_180 Hb_001102_310--Hb_029508_020 Hb_001102_310--Hb_000541_030 Hb_017400_010 Hb_017400_010 Hb_001102_310--Hb_017400_010 Hb_029508_020--Hb_000541_030 Hb_029508_020--Hb_000347_210 Hb_029508_020--Hb_119808_020 Hb_016734_050 Hb_016734_050 Hb_029508_020--Hb_016734_050 Hb_000541_030--Hb_000347_210 Hb_000541_030--Hb_119808_020 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.196402 7.25002 0.0787926 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.723432 0.234475 0 0.25777

CAGE analysis