Hb_002498_040

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2498: 24381-26705
Sequence    

Annotation

kegg
ID rcu:RCOM_0903720
description WRKY transcription factor, putative
nr
ID XP_012091314.1
description PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
swissprot
ID Q9C519
description WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1
trembl
ID S5CKG1
description WRKY transcription factor 31 OS=Jatropha curcas GN=WRKY31 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25979: 25217-25918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_040 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
2 Hb_008097_020 0.1983906717 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_059379_020 0.2149884228 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
4 Hb_008145_010 0.2154741711 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_002027_310 0.216853819 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009230_040 0.219281356 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004855_050 0.220806902 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
8 Hb_008553_010 0.2221376231 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_001101_030 0.2249454592 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
10 Hb_013652_010 0.230422783 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_011063_060 0.2306300881 - - PREDICTED: endochitinase-like [Jatropha curcas]
12 Hb_006919_010 0.231113508 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
13 Hb_000407_110 0.2326333341 - - ripening-induced ACC oxidase [Carica papaya]
14 Hb_001609_080 0.2347735051 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
15 Hb_001691_030 0.2358844897 - - lipoxygenase, putative [Ricinus communis]
16 Hb_007875_070 0.2401995187 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
17 Hb_005653_100 0.2416821443 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
18 Hb_001168_010 0.2426325295 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
19 Hb_004800_220 0.2440653992 - - PREDICTED: random slug protein 5 [Jatropha curcas]
20 Hb_012553_020 0.2442873556 - - hypothetical protein JCGZ_09282 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_040 Hb_002498_040 Hb_008097_020 Hb_008097_020 Hb_002498_040--Hb_008097_020 Hb_059379_020 Hb_059379_020 Hb_002498_040--Hb_059379_020 Hb_008145_010 Hb_008145_010 Hb_002498_040--Hb_008145_010 Hb_002027_310 Hb_002027_310 Hb_002498_040--Hb_002027_310 Hb_009230_040 Hb_009230_040 Hb_002498_040--Hb_009230_040 Hb_004855_050 Hb_004855_050 Hb_002498_040--Hb_004855_050 Hb_004800_220 Hb_004800_220 Hb_008097_020--Hb_004800_220 Hb_006538_010 Hb_006538_010 Hb_008097_020--Hb_006538_010 Hb_011063_060 Hb_011063_060 Hb_008097_020--Hb_011063_060 Hb_005010_040 Hb_005010_040 Hb_008097_020--Hb_005010_040 Hb_000684_490 Hb_000684_490 Hb_008097_020--Hb_000684_490 Hb_001454_300 Hb_001454_300 Hb_008097_020--Hb_001454_300 Hb_059379_020--Hb_002027_310 Hb_013652_010 Hb_013652_010 Hb_059379_020--Hb_013652_010 Hb_002376_030 Hb_002376_030 Hb_059379_020--Hb_002376_030 Hb_059379_020--Hb_009230_040 Hb_002374_110 Hb_002374_110 Hb_059379_020--Hb_002374_110 Hb_149515_010 Hb_149515_010 Hb_008145_010--Hb_149515_010 Hb_008145_010--Hb_004800_220 Hb_000453_130 Hb_000453_130 Hb_008145_010--Hb_000453_130 Hb_000649_180 Hb_000649_180 Hb_008145_010--Hb_000649_180 Hb_007919_040 Hb_007919_040 Hb_008145_010--Hb_007919_040 Hb_000527_070 Hb_000527_070 Hb_008145_010--Hb_000527_070 Hb_002027_310--Hb_002376_030 Hb_000220_170 Hb_000220_170 Hb_002027_310--Hb_000220_170 Hb_002027_310--Hb_013652_010 Hb_002027_310--Hb_002374_110 Hb_001723_070 Hb_001723_070 Hb_002027_310--Hb_001723_070 Hb_003050_050 Hb_003050_050 Hb_002027_310--Hb_003050_050 Hb_064885_050 Hb_064885_050 Hb_009230_040--Hb_064885_050 Hb_003581_240 Hb_003581_240 Hb_009230_040--Hb_003581_240 Hb_000813_120 Hb_000813_120 Hb_009230_040--Hb_000813_120 Hb_000118_010 Hb_000118_010 Hb_009230_040--Hb_000118_010 Hb_027288_010 Hb_027288_010 Hb_009230_040--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_009230_040--Hb_001173_050 Hb_012553_020 Hb_012553_020 Hb_004855_050--Hb_012553_020 Hb_007875_070 Hb_007875_070 Hb_004855_050--Hb_007875_070 Hb_000984_080 Hb_000984_080 Hb_004855_050--Hb_000984_080 Hb_000976_020 Hb_000976_020 Hb_004855_050--Hb_000976_020 Hb_008225_080 Hb_008225_080 Hb_004855_050--Hb_008225_080 Hb_000189_260 Hb_000189_260 Hb_004855_050--Hb_000189_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0108907 4.00456 3.55743 0.554198 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297195 0.194861 2.13815 15.0756 0.287526

CAGE analysis