Hb_059379_020

Information

Type -
Description -
Location Contig59379: 8178-9661
Sequence    

Annotation

kegg
ID pop:POPTR_0001s45530g
description POPTRDRAFT_550470; eugenol O-methyltransferase family protein
nr
ID XP_011038013.1
description PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
swissprot
ID Q43609
description Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
trembl
ID B9GJ54
description Eugenol O-methyltransferase family protein OS=Populus trichocarpa GN=POPTR_0001s45530g PE=4 SV=1
Gene Ontology
ID GO:0008171
description caffeic acid 3-o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059379_020 0.0 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
2 Hb_002027_310 0.1797967499 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013652_010 0.1963227515 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_002376_030 0.2037488308 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_009230_040 0.212500346 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002498_040 0.2149884228 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
7 Hb_002374_110 0.2153461979 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
8 Hb_006919_010 0.2189117581 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
9 Hb_000407_110 0.2195899342 - - ripening-induced ACC oxidase [Carica papaya]
10 Hb_001006_200 0.2229829585 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
11 Hb_000462_020 0.2236088736 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_003581_240 0.2239682422 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_099198_010 0.2265087889 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
14 Hb_084495_010 0.2292069848 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
15 Hb_001609_080 0.2293494665 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
16 Hb_000118_010 0.2299293484 desease resistance Gene Name: LRR_4 hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
17 Hb_014113_010 0.2300706975 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_008553_010 0.2316465963 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_007483_030 0.2370932858 - - -
20 Hb_010174_140 0.2375302316 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_059379_020 Hb_059379_020 Hb_002027_310 Hb_002027_310 Hb_059379_020--Hb_002027_310 Hb_013652_010 Hb_013652_010 Hb_059379_020--Hb_013652_010 Hb_002376_030 Hb_002376_030 Hb_059379_020--Hb_002376_030 Hb_009230_040 Hb_009230_040 Hb_059379_020--Hb_009230_040 Hb_002498_040 Hb_002498_040 Hb_059379_020--Hb_002498_040 Hb_002374_110 Hb_002374_110 Hb_059379_020--Hb_002374_110 Hb_002027_310--Hb_002376_030 Hb_000220_170 Hb_000220_170 Hb_002027_310--Hb_000220_170 Hb_002027_310--Hb_013652_010 Hb_002027_310--Hb_002374_110 Hb_001723_070 Hb_001723_070 Hb_002027_310--Hb_001723_070 Hb_003050_050 Hb_003050_050 Hb_002027_310--Hb_003050_050 Hb_013652_010--Hb_002374_110 Hb_013652_010--Hb_002376_030 Hb_006919_010 Hb_006919_010 Hb_013652_010--Hb_006919_010 Hb_000407_110 Hb_000407_110 Hb_013652_010--Hb_000407_110 Hb_127743_030 Hb_127743_030 Hb_013652_010--Hb_127743_030 Hb_003166_040 Hb_003166_040 Hb_013652_010--Hb_003166_040 Hb_002376_030--Hb_006919_010 Hb_002376_030--Hb_002374_110 Hb_007483_030 Hb_007483_030 Hb_002376_030--Hb_007483_030 Hb_002376_030--Hb_000407_110 Hb_003581_240 Hb_003581_240 Hb_002376_030--Hb_003581_240 Hb_064885_050 Hb_064885_050 Hb_009230_040--Hb_064885_050 Hb_009230_040--Hb_003581_240 Hb_000813_120 Hb_000813_120 Hb_009230_040--Hb_000813_120 Hb_000118_010 Hb_000118_010 Hb_009230_040--Hb_000118_010 Hb_027288_010 Hb_027288_010 Hb_009230_040--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_009230_040--Hb_001173_050 Hb_008097_020 Hb_008097_020 Hb_002498_040--Hb_008097_020 Hb_008145_010 Hb_008145_010 Hb_002498_040--Hb_008145_010 Hb_002498_040--Hb_002027_310 Hb_002498_040--Hb_009230_040 Hb_004855_050 Hb_004855_050 Hb_002498_040--Hb_004855_050 Hb_002374_110--Hb_127743_030 Hb_002374_110--Hb_003166_040 Hb_002374_110--Hb_006919_010 Hb_058526_010 Hb_058526_010 Hb_002374_110--Hb_058526_010 Hb_002374_110--Hb_007483_030 Hb_002374_110--Hb_027288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.469844 0.316117 0.0381887 0.0462388 0.053753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0787444 1.36681 0

CAGE analysis