Hb_001454_300

Information

Type -
Description -
Location Contig1454: 223855-231767
Sequence    

Annotation

kegg
ID rcu:RCOM_0681430
description nucleotide binding protein, putative
nr
ID XP_002516937.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID C6L7U1
description Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2
trembl
ID B9RT68
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0681430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11790: 225501-226239 , PASA_asmbl_11791: 226251-226635 , PASA_asmbl_11793: 227389-227709 , PASA_asmbl_11794: 231387-255573 , PASA_asmbl_11795: 227783-231889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_300 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_001279_220 0.0763505261 - - protein binding protein, putative [Ricinus communis]
3 Hb_001369_320 0.0815554796 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
4 Hb_175968_010 0.1003235492 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
5 Hb_004712_080 0.1091076469 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
6 Hb_001691_060 0.1204095725 - - lipoxygenase, putative [Ricinus communis]
7 Hb_001775_050 0.1215931371 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
8 Hb_004774_060 0.1224176941 - - -
9 Hb_020902_020 0.1250846187 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
10 Hb_010334_040 0.1267062806 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
11 Hb_009486_100 0.1269519436 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_032631_080 0.1271072321 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
13 Hb_000057_160 0.1326392691 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
14 Hb_001005_210 0.1329344319 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
15 Hb_012796_050 0.1339383353 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
16 Hb_148914_010 0.1395769092 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_033363_080 0.1396237101 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
18 Hb_074892_010 0.142096159 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
19 Hb_000005_350 0.1425490129 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
20 Hb_000484_040 0.1446055227 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001454_300 Hb_001454_300 Hb_001279_220 Hb_001279_220 Hb_001454_300--Hb_001279_220 Hb_001369_320 Hb_001369_320 Hb_001454_300--Hb_001369_320 Hb_175968_010 Hb_175968_010 Hb_001454_300--Hb_175968_010 Hb_004712_080 Hb_004712_080 Hb_001454_300--Hb_004712_080 Hb_001691_060 Hb_001691_060 Hb_001454_300--Hb_001691_060 Hb_001775_050 Hb_001775_050 Hb_001454_300--Hb_001775_050 Hb_001279_220--Hb_175968_010 Hb_004774_060 Hb_004774_060 Hb_001279_220--Hb_004774_060 Hb_001279_220--Hb_001369_320 Hb_000659_010 Hb_000659_010 Hb_001279_220--Hb_000659_010 Hb_001279_220--Hb_004712_080 Hb_000057_160 Hb_000057_160 Hb_001369_320--Hb_000057_160 Hb_001369_320--Hb_001775_050 Hb_129204_050 Hb_129204_050 Hb_001369_320--Hb_129204_050 Hb_020902_020 Hb_020902_020 Hb_001369_320--Hb_020902_020 Hb_175968_010--Hb_004774_060 Hb_175968_010--Hb_000659_010 Hb_004222_010 Hb_004222_010 Hb_175968_010--Hb_004222_010 Hb_097908_010 Hb_097908_010 Hb_175968_010--Hb_097908_010 Hb_004055_180 Hb_004055_180 Hb_175968_010--Hb_004055_180 Hb_012796_050 Hb_012796_050 Hb_004712_080--Hb_012796_050 Hb_004712_080--Hb_175968_010 Hb_033363_080 Hb_033363_080 Hb_004712_080--Hb_033363_080 Hb_004712_080--Hb_004774_060 Hb_011145_020 Hb_011145_020 Hb_001691_060--Hb_011145_020 Hb_000005_350 Hb_000005_350 Hb_001691_060--Hb_000005_350 Hb_000075_030 Hb_000075_030 Hb_001691_060--Hb_000075_030 Hb_000917_330 Hb_000917_330 Hb_001691_060--Hb_000917_330 Hb_001922_010 Hb_001922_010 Hb_001691_060--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_001691_060--Hb_000589_100 Hb_001775_050--Hb_020902_020 Hb_001775_050--Hb_129204_050 Hb_001775_050--Hb_000057_160 Hb_005653_100 Hb_005653_100 Hb_001775_050--Hb_005653_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0170816 3.02424 6.19672 1.79008 0.030663 0.0142829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0119606 0.0376498 0.0180552 35.6962 4.27038

CAGE analysis