Hb_001775_050

Information

Type -
Description -
Location Contig1775: 42674-43591
Sequence    

Annotation

kegg
ID rcu:RCOM_2160650
description ricin-agglutinin family protein (EC:3.2.2.22)
nr
ID NP_001295736.1
description ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
swissprot
ID P33186
description Ribosome-inactivating protein gelonin OS=Suregada multiflora GN=GEL PE=1 SV=2
trembl
ID I3V675
description rRNA N-glycosidase OS=Jatropha curcas GN=JCGZ_10886 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17033: 42466-43810
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_050 0.0 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
2 Hb_020902_020 0.0849139082 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
3 Hb_129204_050 0.0868891794 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
4 Hb_001369_320 0.1045146734 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
5 Hb_000057_160 0.112244667 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
6 Hb_005653_100 0.1203279295 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
7 Hb_001454_300 0.1215931371 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_001101_020 0.1257085471 - - hypothetical protein RCOM_0615680 [Ricinus communis]
9 Hb_025469_040 0.1306273238 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
10 Hb_001691_060 0.1359762119 - - lipoxygenase, putative [Ricinus communis]
11 Hb_001609_080 0.1371470573 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
12 Hb_000625_130 0.1383320573 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_116469_010 0.1398713463 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
14 Hb_000631_130 0.140128565 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
15 Hb_001279_220 0.1423826084 - - protein binding protein, putative [Ricinus communis]
16 Hb_131864_020 0.1434517731 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
17 Hb_000705_060 0.146342528 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
18 Hb_001473_100 0.1513060291 - - chalcone synthase 1 [Jatropha curcas]
19 Hb_142522_030 0.1524390001 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
20 Hb_001936_030 0.1524647651 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001775_050 Hb_001775_050 Hb_020902_020 Hb_020902_020 Hb_001775_050--Hb_020902_020 Hb_129204_050 Hb_129204_050 Hb_001775_050--Hb_129204_050 Hb_001369_320 Hb_001369_320 Hb_001775_050--Hb_001369_320 Hb_000057_160 Hb_000057_160 Hb_001775_050--Hb_000057_160 Hb_005653_100 Hb_005653_100 Hb_001775_050--Hb_005653_100 Hb_001454_300 Hb_001454_300 Hb_001775_050--Hb_001454_300 Hb_001609_080 Hb_001609_080 Hb_020902_020--Hb_001609_080 Hb_008080_040 Hb_008080_040 Hb_020902_020--Hb_008080_040 Hb_020902_020--Hb_005653_100 Hb_000407_110 Hb_000407_110 Hb_020902_020--Hb_000407_110 Hb_020902_020--Hb_001454_300 Hb_000705_100 Hb_000705_100 Hb_129204_050--Hb_000705_100 Hb_000705_060 Hb_000705_060 Hb_129204_050--Hb_000705_060 Hb_001101_020 Hb_001101_020 Hb_129204_050--Hb_001101_020 Hb_129204_050--Hb_001369_320 Hb_129204_050--Hb_000057_160 Hb_001369_320--Hb_001454_300 Hb_001279_220 Hb_001279_220 Hb_001369_320--Hb_001279_220 Hb_001369_320--Hb_000057_160 Hb_001369_320--Hb_020902_020 Hb_000057_160--Hb_001279_220 Hb_000057_160--Hb_001454_300 Hb_029571_010 Hb_029571_010 Hb_000057_160--Hb_029571_010 Hb_005653_100--Hb_001609_080 Hb_005653_100--Hb_000407_110 Hb_111693_010 Hb_111693_010 Hb_005653_100--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_005653_100--Hb_004055_080 Hb_006919_010 Hb_006919_010 Hb_005653_100--Hb_006919_010 Hb_001454_300--Hb_001279_220 Hb_175968_010 Hb_175968_010 Hb_001454_300--Hb_175968_010 Hb_004712_080 Hb_004712_080 Hb_001454_300--Hb_004712_080 Hb_001691_060 Hb_001691_060 Hb_001454_300--Hb_001691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.86525 25.0217 3.86936 0 0.02803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11288 0 0 94.6527 4.33017

CAGE analysis