Hb_000171_040

Information

Type -
Description -
Location Contig171: 83306-87846
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000171_040 0.0 - - -
2 Hb_003362_060 0.137799268 - - -
3 Hb_131949_010 0.1579292174 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
4 Hb_006816_510 0.1931049206 - - Pectinesterase inhibitor, putative [Ricinus communis]
5 Hb_184798_040 0.2020739905 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_084426_010 0.2072111487 - - -
7 Hb_005975_020 0.2426880392 - - -
8 Hb_070745_010 0.2435012173 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
9 Hb_007333_020 0.2649231439 - - -
10 Hb_000146_060 0.2771521397 - - -
11 Hb_008727_070 0.2852803854 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
12 Hb_008064_010 0.2865582162 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
13 Hb_004939_020 0.2941300174 - - gag/pol protein [Bryonia dioica]
14 Hb_000107_320 0.3098029727 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
15 Hb_000684_340 0.3325806019 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
16 Hb_004899_280 0.3360550723 - - -
17 Hb_034569_020 0.3399099977 - - -
18 Hb_004846_170 0.3438398924 - - heat-shock protein 70 [Hevea brasiliensis]
19 Hb_004330_030 0.3496052659 - - -
20 Hb_009742_010 0.3506230739 - - -

Gene co-expression network

sample Hb_000171_040 Hb_000171_040 Hb_003362_060 Hb_003362_060 Hb_000171_040--Hb_003362_060 Hb_131949_010 Hb_131949_010 Hb_000171_040--Hb_131949_010 Hb_006816_510 Hb_006816_510 Hb_000171_040--Hb_006816_510 Hb_184798_040 Hb_184798_040 Hb_000171_040--Hb_184798_040 Hb_084426_010 Hb_084426_010 Hb_000171_040--Hb_084426_010 Hb_005975_020 Hb_005975_020 Hb_000171_040--Hb_005975_020 Hb_003362_060--Hb_131949_010 Hb_003362_060--Hb_084426_010 Hb_003362_060--Hb_184798_040 Hb_034569_020 Hb_034569_020 Hb_003362_060--Hb_034569_020 Hb_004899_280 Hb_004899_280 Hb_003362_060--Hb_004899_280 Hb_131949_010--Hb_084426_010 Hb_131949_010--Hb_184798_040 Hb_131949_010--Hb_034569_020 Hb_131949_010--Hb_004899_280 Hb_007333_020 Hb_007333_020 Hb_006816_510--Hb_007333_020 Hb_070745_010 Hb_070745_010 Hb_006816_510--Hb_070745_010 Hb_008064_010 Hb_008064_010 Hb_006816_510--Hb_008064_010 Hb_002641_100 Hb_002641_100 Hb_006816_510--Hb_002641_100 Hb_023024_010 Hb_023024_010 Hb_006816_510--Hb_023024_010 Hb_184798_040--Hb_034569_020 Hb_009742_010 Hb_009742_010 Hb_184798_040--Hb_009742_010 Hb_184798_040--Hb_004899_280 Hb_022693_150 Hb_022693_150 Hb_084426_010--Hb_022693_150 Hb_000922_310 Hb_000922_310 Hb_084426_010--Hb_000922_310 Hb_000362_240 Hb_000362_240 Hb_084426_010--Hb_000362_240 Hb_000107_320 Hb_000107_320 Hb_005975_020--Hb_000107_320 Hb_005975_020--Hb_004899_280 Hb_005975_020--Hb_003362_060 Hb_005975_020--Hb_131949_010 Hb_005975_020--Hb_184798_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174199 0.351067 0 0 0.22244 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis