Hb_003938_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig3938: 30381-30824
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24450g
description POPTRDRAFT_651885; hypothetical protein
nr
ID AGL34961.1
description ethylene-responsive transcription factor 2 [Hevea brasiliensis]
swissprot
ID Q9LTC5
description Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=1 SV=1
trembl
ID R4N1J4
description Ethylene-responsive transcription factor 2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf098-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_030 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
2 Hb_105226_010 0.1511018483 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
3 Hb_000540_090 0.1897180425 - - PREDICTED: chitinase 2-like [Jatropha curcas]
4 Hb_083822_010 0.1928970651 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_040359_010 0.19770399 - - triacylglycerol lipase, putative [Ricinus communis]
6 Hb_001269_460 0.2124018033 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
7 Hb_000375_230 0.2159374841 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
8 Hb_000392_460 0.2355915964 - - Pectate lyase precursor, putative [Ricinus communis]
9 Hb_021346_040 0.2433366866 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
10 Hb_059481_010 0.27839048 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
11 Hb_006120_120 0.2797900998 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000853_040 0.2813883737 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001470_070 0.2821078442 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_027445_040 0.3013168339 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]
15 Hb_001022_020 0.303919887 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
16 Hb_171974_010 0.3045174135 - - aldo-keto reductase, putative [Ricinus communis]
17 Hb_002119_030 0.3108175727 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
18 Hb_001623_310 0.3128234047 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
19 Hb_007145_010 0.3133331216 - - ammonium transporter 3.1-like protein [Camellia sinensis]
20 Hb_006120_170 0.3158018706 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]

Gene co-expression network

sample Hb_003938_030 Hb_003938_030 Hb_105226_010 Hb_105226_010 Hb_003938_030--Hb_105226_010 Hb_000540_090 Hb_000540_090 Hb_003938_030--Hb_000540_090 Hb_083822_010 Hb_083822_010 Hb_003938_030--Hb_083822_010 Hb_040359_010 Hb_040359_010 Hb_003938_030--Hb_040359_010 Hb_001269_460 Hb_001269_460 Hb_003938_030--Hb_001269_460 Hb_000375_230 Hb_000375_230 Hb_003938_030--Hb_000375_230 Hb_105226_010--Hb_040359_010 Hb_105226_010--Hb_000540_090 Hb_105226_010--Hb_001269_460 Hb_001470_070 Hb_001470_070 Hb_105226_010--Hb_001470_070 Hb_002374_200 Hb_002374_200 Hb_105226_010--Hb_002374_200 Hb_002119_030 Hb_002119_030 Hb_000540_090--Hb_002119_030 Hb_171974_010 Hb_171974_010 Hb_000540_090--Hb_171974_010 Hb_067028_010 Hb_067028_010 Hb_000540_090--Hb_067028_010 Hb_001922_100 Hb_001922_100 Hb_000540_090--Hb_001922_100 Hb_000025_490 Hb_000025_490 Hb_000540_090--Hb_000025_490 Hb_000392_460 Hb_000392_460 Hb_083822_010--Hb_000392_460 Hb_021346_040 Hb_021346_040 Hb_083822_010--Hb_021346_040 Hb_083822_010--Hb_000375_230 Hb_001623_310 Hb_001623_310 Hb_083822_010--Hb_001623_310 Hb_000853_040 Hb_000853_040 Hb_083822_010--Hb_000853_040 Hb_040359_010--Hb_001269_460 Hb_006018_050 Hb_006018_050 Hb_040359_010--Hb_006018_050 Hb_002675_200 Hb_002675_200 Hb_040359_010--Hb_002675_200 Hb_040359_010--Hb_001470_070 Hb_001269_460--Hb_006018_050 Hb_027445_040 Hb_027445_040 Hb_001269_460--Hb_027445_040 Hb_003633_100 Hb_003633_100 Hb_001269_460--Hb_003633_100 Hb_000375_230--Hb_000540_090 Hb_000815_180 Hb_000815_180 Hb_000375_230--Hb_000815_180 Hb_156637_010 Hb_156637_010 Hb_000375_230--Hb_156637_010 Hb_011549_020 Hb_011549_020 Hb_000375_230--Hb_011549_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.52262 5.12376 0.412895 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 2.45302 0 0.271959 0

CAGE analysis