Hb_105226_010

Information

Type -
Description -
Location Contig105226: 119-793
Sequence    

Annotation

kegg
ID cic:CICLE_v10025453mg
description hypothetical protein
nr
ID XP_012081045.1
description PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
swissprot
ID Q69T29
description Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1
trembl
ID A0A067K2P6
description Ammonium transporter OS=Jatropha curcas GN=JCGZ_18140 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 3 member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105226_010 0.0 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
2 Hb_003938_030 0.1511018483 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
3 Hb_040359_010 0.158027757 - - triacylglycerol lipase, putative [Ricinus communis]
4 Hb_000540_090 0.2185198727 - - PREDICTED: chitinase 2-like [Jatropha curcas]
5 Hb_001269_460 0.2370817862 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
6 Hb_001470_070 0.2443981238 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_002374_200 0.2520326355 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
8 Hb_006120_120 0.2523474569 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000375_230 0.2553596611 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_001022_020 0.2563179433 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
11 Hb_007145_010 0.2613689398 - - ammonium transporter 3.1-like protein [Camellia sinensis]
12 Hb_002400_020 0.2656243627 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
13 Hb_006018_050 0.2664076228 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
14 Hb_083822_010 0.266968153 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_119316_020 0.2821268599 - - -
16 Hb_002675_200 0.2889146701 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
17 Hb_001951_210 0.2901548725 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021346_040 0.2974989957 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
19 Hb_003038_110 0.300812056 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
20 Hb_006120_170 0.3008275585 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]

Gene co-expression network

sample Hb_105226_010 Hb_105226_010 Hb_003938_030 Hb_003938_030 Hb_105226_010--Hb_003938_030 Hb_040359_010 Hb_040359_010 Hb_105226_010--Hb_040359_010 Hb_000540_090 Hb_000540_090 Hb_105226_010--Hb_000540_090 Hb_001269_460 Hb_001269_460 Hb_105226_010--Hb_001269_460 Hb_001470_070 Hb_001470_070 Hb_105226_010--Hb_001470_070 Hb_002374_200 Hb_002374_200 Hb_105226_010--Hb_002374_200 Hb_003938_030--Hb_000540_090 Hb_083822_010 Hb_083822_010 Hb_003938_030--Hb_083822_010 Hb_003938_030--Hb_040359_010 Hb_003938_030--Hb_001269_460 Hb_000375_230 Hb_000375_230 Hb_003938_030--Hb_000375_230 Hb_040359_010--Hb_001269_460 Hb_006018_050 Hb_006018_050 Hb_040359_010--Hb_006018_050 Hb_002675_200 Hb_002675_200 Hb_040359_010--Hb_002675_200 Hb_040359_010--Hb_001470_070 Hb_002119_030 Hb_002119_030 Hb_000540_090--Hb_002119_030 Hb_171974_010 Hb_171974_010 Hb_000540_090--Hb_171974_010 Hb_067028_010 Hb_067028_010 Hb_000540_090--Hb_067028_010 Hb_001922_100 Hb_001922_100 Hb_000540_090--Hb_001922_100 Hb_000025_490 Hb_000025_490 Hb_000540_090--Hb_000025_490 Hb_001269_460--Hb_006018_050 Hb_027445_040 Hb_027445_040 Hb_001269_460--Hb_027445_040 Hb_003633_100 Hb_003633_100 Hb_001269_460--Hb_003633_100 Hb_001470_070--Hb_002675_200 Hb_007145_010 Hb_007145_010 Hb_001470_070--Hb_007145_010 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001322_030 Hb_001322_030 Hb_001470_070--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001470_070--Hb_034904_010 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_004551_010 Hb_004551_010 Hb_002374_200--Hb_004551_010 Hb_000134_260 Hb_000134_260 Hb_002374_200--Hb_000134_260 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_001660_080 Hb_001660_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16375 1.31565 0.178229 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.66925 0 0.05455 0.131751

CAGE analysis