Hb_001470_070

Information

Type -
Description -
Location Contig1470: 159082-160041
Sequence    

Annotation

kegg
ID rcu:RCOM_0083440
description metal ion binding protein, putative
nr
ID XP_002534419.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9T850
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_0083440 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11916: 159072-160168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001470_070 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_002675_200 0.1477677017 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
3 Hb_007145_010 0.1973874982 - - ammonium transporter 3.1-like protein [Camellia sinensis]
4 Hb_006503_010 0.202371094 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_005144_190 0.211635821 - - hypothetical protein F383_09558 [Gossypium arboreum]
6 Hb_001322_030 0.2325810372 - - triacylglycerol lipase, putative [Ricinus communis]
7 Hb_034904_010 0.2412137718 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
8 Hb_011972_010 0.2431865899 - - conserved hypothetical protein [Ricinus communis]
9 Hb_040359_010 0.243979895 - - triacylglycerol lipase, putative [Ricinus communis]
10 Hb_105226_010 0.2443981238 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
11 Hb_089140_110 0.2506892871 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000049_240 0.251757551 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
13 Hb_000216_010 0.2554146562 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
14 Hb_001269_460 0.2641283504 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
15 Hb_000984_260 0.2645713614 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
16 Hb_009775_040 0.2655047642 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
17 Hb_007425_020 0.2712511068 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
18 Hb_006018_050 0.2723765146 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
19 Hb_003938_030 0.2821078442 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
20 Hb_007849_010 0.2821156037 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]

Gene co-expression network

sample Hb_001470_070 Hb_001470_070 Hb_002675_200 Hb_002675_200 Hb_001470_070--Hb_002675_200 Hb_007145_010 Hb_007145_010 Hb_001470_070--Hb_007145_010 Hb_006503_010 Hb_006503_010 Hb_001470_070--Hb_006503_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001322_030 Hb_001322_030 Hb_001470_070--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001470_070--Hb_034904_010 Hb_128524_020 Hb_128524_020 Hb_002675_200--Hb_128524_020 Hb_011618_100 Hb_011618_100 Hb_002675_200--Hb_011618_100 Hb_128486_010 Hb_128486_010 Hb_002675_200--Hb_128486_010 Hb_089140_110 Hb_089140_110 Hb_002675_200--Hb_089140_110 Hb_008768_020 Hb_008768_020 Hb_002675_200--Hb_008768_020 Hb_007145_010--Hb_001322_030 Hb_001226_010 Hb_001226_010 Hb_007145_010--Hb_001226_010 Hb_011972_010 Hb_011972_010 Hb_007145_010--Hb_011972_010 Hb_007145_010--Hb_034904_010 Hb_040359_010 Hb_040359_010 Hb_007145_010--Hb_040359_010 Hb_000216_010 Hb_000216_010 Hb_006503_010--Hb_000216_010 Hb_009775_040 Hb_009775_040 Hb_006503_010--Hb_009775_040 Hb_143629_030 Hb_143629_030 Hb_006503_010--Hb_143629_030 Hb_002918_130 Hb_002918_130 Hb_006503_010--Hb_002918_130 Hb_006503_010--Hb_002675_200 Hb_000886_030 Hb_000886_030 Hb_005144_190--Hb_000886_030 Hb_003687_220 Hb_003687_220 Hb_005144_190--Hb_003687_220 Hb_000599_310 Hb_000599_310 Hb_005144_190--Hb_000599_310 Hb_002631_300 Hb_002631_300 Hb_005144_190--Hb_002631_300 Hb_001623_070 Hb_001623_070 Hb_005144_190--Hb_001623_070 Hb_001322_030--Hb_001226_010 Hb_001322_030--Hb_011972_010 Hb_001322_030--Hb_034904_010 Hb_001322_030--Hb_128486_010 Hb_034904_010--Hb_001226_010 Hb_001143_150 Hb_001143_150 Hb_034904_010--Hb_001143_150 Hb_034904_010--Hb_005144_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.478824 76.5446 73.132 34.244 0.107481 0.283872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81059 100.51 2.28547 23.7643 9.19534

CAGE analysis