Hb_001143_150

Information

Type -
Description -
Location Contig1143: 147574-148958
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08220g
description POPTRDRAFT_754561; hypothetical protein
nr
ID XP_011027502.1
description PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
swissprot
ID P59910
description DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1
trembl
ID B9GU22
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08220g PE=4 SV=2
Gene Ontology
ID GO:0051082
description dnaj chaperone c-terminal domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_150 0.0 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
2 Hb_160246_010 0.1318001502 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_003266_070 0.1927586327 - - -
4 Hb_000175_150 0.2009165674 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
5 Hb_003643_030 0.2443529392 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
6 Hb_034904_010 0.2466431023 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
7 Hb_000740_020 0.259575831 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
8 Hb_000087_090 0.2774716081 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
9 Hb_000031_330 0.2871013969 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
10 Hb_107429_010 0.2930355719 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
11 Hb_001754_160 0.2967179044 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
12 Hb_001437_160 0.2973246356 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
13 Hb_000112_100 0.3001443826 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_000302_350 0.3116153239 - - polygalacturonase, putative [Ricinus communis]
15 Hb_154600_010 0.3180294365 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
16 Hb_002338_030 0.3187416912 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
17 Hb_022092_080 0.3188749118 - - -
18 Hb_001269_250 0.3252407213 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
19 Hb_000917_170 0.3257473689 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
20 Hb_000116_200 0.329323386 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]

Gene co-expression network

sample Hb_001143_150 Hb_001143_150 Hb_160246_010 Hb_160246_010 Hb_001143_150--Hb_160246_010 Hb_003266_070 Hb_003266_070 Hb_001143_150--Hb_003266_070 Hb_000175_150 Hb_000175_150 Hb_001143_150--Hb_000175_150 Hb_003643_030 Hb_003643_030 Hb_001143_150--Hb_003643_030 Hb_034904_010 Hb_034904_010 Hb_001143_150--Hb_034904_010 Hb_000740_020 Hb_000740_020 Hb_001143_150--Hb_000740_020 Hb_160246_010--Hb_000175_150 Hb_160246_010--Hb_003643_030 Hb_160246_010--Hb_003266_070 Hb_000112_100 Hb_000112_100 Hb_160246_010--Hb_000112_100 Hb_006655_040 Hb_006655_040 Hb_160246_010--Hb_006655_040 Hb_003266_070--Hb_003643_030 Hb_000087_090 Hb_000087_090 Hb_003266_070--Hb_000087_090 Hb_001754_160 Hb_001754_160 Hb_003266_070--Hb_001754_160 Hb_011099_010 Hb_011099_010 Hb_003266_070--Hb_011099_010 Hb_003740_030 Hb_003740_030 Hb_000175_150--Hb_003740_030 Hb_000663_070 Hb_000663_070 Hb_000175_150--Hb_000663_070 Hb_000111_430 Hb_000111_430 Hb_000175_150--Hb_000111_430 Hb_004163_020 Hb_004163_020 Hb_000175_150--Hb_004163_020 Hb_003643_030--Hb_001754_160 Hb_001195_210 Hb_001195_210 Hb_003643_030--Hb_001195_210 Hb_000116_200 Hb_000116_200 Hb_003643_030--Hb_000116_200 Hb_001226_010 Hb_001226_010 Hb_034904_010--Hb_001226_010 Hb_001322_030 Hb_001322_030 Hb_034904_010--Hb_001322_030 Hb_001470_070 Hb_001470_070 Hb_034904_010--Hb_001470_070 Hb_007145_010 Hb_007145_010 Hb_034904_010--Hb_007145_010 Hb_005144_190 Hb_005144_190 Hb_034904_010--Hb_005144_190 Hb_107429_010 Hb_107429_010 Hb_000740_020--Hb_107429_010 Hb_001437_160 Hb_001437_160 Hb_000740_020--Hb_001437_160 Hb_000740_020--Hb_001226_010 Hb_000836_150 Hb_000836_150 Hb_000740_020--Hb_000836_150 Hb_000917_170 Hb_000917_170 Hb_000740_020--Hb_000917_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0304872 0.0323643 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0347154 0 0.0139256 0

CAGE analysis