Hb_001638_080

Information

Type -
Description -
Location Contig1638: 91603-92439
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17810g
description POPTRDRAFT_755456; hypothetical protein
nr
ID XP_012083124.1
description PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JX22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14203 PE=4 SV=1
Gene Ontology
ID GO:0016740
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14988: 91418-92022 , PASA_asmbl_14989: 92196-92544 , PASA_asmbl_14990: 92805-92926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_080 0.0 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
2 Hb_002007_200 0.1822345501 - - -
3 Hb_002272_080 0.2018370361 - - -
4 Hb_001183_010 0.2119829028 - - -
5 Hb_028487_020 0.2164072035 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
6 Hb_088753_010 0.2166205678 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
7 Hb_037767_010 0.2204029501 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_000904_080 0.2307292676 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
9 Hb_000402_210 0.2312984991 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
10 Hb_004880_140 0.2340981554 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
11 Hb_002572_050 0.2348474903 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
12 Hb_002713_010 0.2361096666 - - multidrug resistance protein 1, 2, putative [Ricinus communis]
13 Hb_002097_200 0.2381308084 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
14 Hb_000215_350 0.2407721715 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
15 Hb_176052_010 0.2411788355 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_007017_010 0.2444451821 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
17 Hb_000503_010 0.2448289733 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
18 Hb_002170_040 0.2478481182 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000025_340 0.2488230701 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
20 Hb_000451_070 0.2489721722 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_080 Hb_001638_080 Hb_002007_200 Hb_002007_200 Hb_001638_080--Hb_002007_200 Hb_002272_080 Hb_002272_080 Hb_001638_080--Hb_002272_080 Hb_001183_010 Hb_001183_010 Hb_001638_080--Hb_001183_010 Hb_028487_020 Hb_028487_020 Hb_001638_080--Hb_028487_020 Hb_088753_010 Hb_088753_010 Hb_001638_080--Hb_088753_010 Hb_037767_010 Hb_037767_010 Hb_001638_080--Hb_037767_010 Hb_011512_120 Hb_011512_120 Hb_002007_200--Hb_011512_120 Hb_002007_200--Hb_088753_010 Hb_000904_080 Hb_000904_080 Hb_002007_200--Hb_000904_080 Hb_004880_140 Hb_004880_140 Hb_002007_200--Hb_004880_140 Hb_001437_080 Hb_001437_080 Hb_002007_200--Hb_001437_080 Hb_002572_050 Hb_002572_050 Hb_002007_200--Hb_002572_050 Hb_000025_340 Hb_000025_340 Hb_002272_080--Hb_000025_340 Hb_001817_160 Hb_001817_160 Hb_002272_080--Hb_001817_160 Hb_002272_080--Hb_001437_080 Hb_002272_080--Hb_004880_140 Hb_005260_020 Hb_005260_020 Hb_002272_080--Hb_005260_020 Hb_010997_080 Hb_010997_080 Hb_002272_080--Hb_010997_080 Hb_010727_010 Hb_010727_010 Hb_001183_010--Hb_010727_010 Hb_081745_010 Hb_081745_010 Hb_001183_010--Hb_081745_010 Hb_001183_010--Hb_088753_010 Hb_000402_210 Hb_000402_210 Hb_001183_010--Hb_000402_210 Hb_000451_070 Hb_000451_070 Hb_001183_010--Hb_000451_070 Hb_000016_100 Hb_000016_100 Hb_001183_010--Hb_000016_100 Hb_000302_260 Hb_000302_260 Hb_028487_020--Hb_000302_260 Hb_005306_190 Hb_005306_190 Hb_028487_020--Hb_005306_190 Hb_002097_200 Hb_002097_200 Hb_028487_020--Hb_002097_200 Hb_000432_040 Hb_000432_040 Hb_028487_020--Hb_000432_040 Hb_028487_020--Hb_000451_070 Hb_001564_080 Hb_001564_080 Hb_028487_020--Hb_001564_080 Hb_088753_010--Hb_000402_210 Hb_088753_010--Hb_002097_200 Hb_088753_010--Hb_000451_070 Hb_189208_020 Hb_189208_020 Hb_088753_010--Hb_189208_020 Hb_006788_140 Hb_006788_140 Hb_088753_010--Hb_006788_140 Hb_088753_010--Hb_000302_260 Hb_002876_290 Hb_002876_290 Hb_037767_010--Hb_002876_290 Hb_002234_190 Hb_002234_190 Hb_037767_010--Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_037767_010--Hb_073395_010 Hb_037767_010--Hb_000025_340 Hb_000426_030 Hb_000426_030 Hb_037767_010--Hb_000426_030 Hb_037767_010--Hb_002272_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51899 9.98757 0.935109 2.39548 2.05783 3.66028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2081 11.9998 0.726453 3.59689 1.20967

CAGE analysis