Hb_005048_060

Information

Type -
Description -
Location Contig5048: 35512-38198
Sequence    

Annotation

kegg
ID rcu:RCOM_1062780
description hypothetical protein
nr
ID XP_002521420.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S601
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005048_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_026687_010 0.2423588454 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
3 Hb_000787_040 0.2505804267 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
4 Hb_001638_080 0.2662700924 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
5 Hb_033834_050 0.2779000393 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000943_060 0.2804410283 - - PREDICTED: uncharacterized protein LOC105635589 [Jatropha curcas]
7 Hb_011628_020 0.2919673103 - - conserved hypothetical protein [Ricinus communis]
8 Hb_054865_080 0.2923173087 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
9 Hb_002784_100 0.2932146586 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
10 Hb_004088_060 0.2982016819 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
11 Hb_001638_070 0.3062182284 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
12 Hb_000099_070 0.3064303787 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
13 Hb_011077_020 0.3081904861 - - kinase, putative [Ricinus communis]
14 Hb_000868_100 0.3160814739 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
15 Hb_006615_080 0.316848075 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
16 Hb_011609_110 0.3170472701 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
17 Hb_003579_020 0.3176494082 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_004460_050 0.3184629159 - - chaperone protein DNAj, putative [Ricinus communis]
19 Hb_001268_100 0.3200963453 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
20 Hb_002007_200 0.3217299821 - - -

Gene co-expression network

sample Hb_005048_060 Hb_005048_060 Hb_026687_010 Hb_026687_010 Hb_005048_060--Hb_026687_010 Hb_000787_040 Hb_000787_040 Hb_005048_060--Hb_000787_040 Hb_001638_080 Hb_001638_080 Hb_005048_060--Hb_001638_080 Hb_033834_050 Hb_033834_050 Hb_005048_060--Hb_033834_050 Hb_000943_060 Hb_000943_060 Hb_005048_060--Hb_000943_060 Hb_011628_020 Hb_011628_020 Hb_005048_060--Hb_011628_020 Hb_003847_020 Hb_003847_020 Hb_026687_010--Hb_003847_020 Hb_003398_140 Hb_003398_140 Hb_026687_010--Hb_003398_140 Hb_028271_020 Hb_028271_020 Hb_026687_010--Hb_028271_020 Hb_000099_070 Hb_000099_070 Hb_026687_010--Hb_000099_070 Hb_003992_080 Hb_003992_080 Hb_026687_010--Hb_003992_080 Hb_000094_110 Hb_000094_110 Hb_026687_010--Hb_000094_110 Hb_002823_020 Hb_002823_020 Hb_000787_040--Hb_002823_020 Hb_000787_040--Hb_001638_080 Hb_000772_060 Hb_000772_060 Hb_000787_040--Hb_000772_060 Hb_176052_010 Hb_176052_010 Hb_000787_040--Hb_176052_010 Hb_026687_030 Hb_026687_030 Hb_000787_040--Hb_026687_030 Hb_002007_200 Hb_002007_200 Hb_001638_080--Hb_002007_200 Hb_002272_080 Hb_002272_080 Hb_001638_080--Hb_002272_080 Hb_001183_010 Hb_001183_010 Hb_001638_080--Hb_001183_010 Hb_028487_020 Hb_028487_020 Hb_001638_080--Hb_028487_020 Hb_088753_010 Hb_088753_010 Hb_001638_080--Hb_088753_010 Hb_037767_010 Hb_037767_010 Hb_001638_080--Hb_037767_010 Hb_002784_100 Hb_002784_100 Hb_033834_050--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_033834_050--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_033834_050--Hb_042871_010 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_000062_300 Hb_000062_300 Hb_033834_050--Hb_000062_300 Hb_091889_010 Hb_091889_010 Hb_000943_060--Hb_091889_010 Hb_000943_060--Hb_011628_020 Hb_010506_010 Hb_010506_010 Hb_000943_060--Hb_010506_010 Hb_001477_150 Hb_001477_150 Hb_000943_060--Hb_001477_150 Hb_000943_060--Hb_026687_010 Hb_002217_460 Hb_002217_460 Hb_000943_060--Hb_002217_460 Hb_011628_020--Hb_033834_050 Hb_011628_020--Hb_042871_010 Hb_011628_020--Hb_091889_010 Hb_011628_020--Hb_002784_100 Hb_003891_080 Hb_003891_080 Hb_011628_020--Hb_003891_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39481 22.6241 2.15135 1.74435 3.59437 0.598173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.778411 38.8248 3.43806 3.7244 0.809316

CAGE analysis