Hb_176052_010

Information

Type -
Description -
Location Contig176052: 22-636
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176052_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_025771_010 0.1894535824 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
3 Hb_003579_020 0.199915555 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
4 Hb_000326_060 0.2074048885 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
5 Hb_005568_080 0.2113290339 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000879_010 0.2160630568 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
7 Hb_000914_090 0.2256424115 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
8 Hb_026687_010 0.2324768261 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
9 Hb_000103_060 0.2357706636 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
10 Hb_002811_230 0.2357841494 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
11 Hb_009486_190 0.2379030364 - - ATP binding protein, putative [Ricinus communis]
12 Hb_033772_050 0.2379733537 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
13 Hb_003847_020 0.2381140666 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_001638_080 0.2411788355 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
15 Hb_003446_050 0.2412363896 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
16 Hb_009222_020 0.2413678909 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
17 Hb_000196_050 0.244463433 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
18 Hb_087596_010 0.2446326059 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
19 Hb_000599_140 0.2450067287 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
20 Hb_006582_020 0.245647056 - - Zinc finger protein ZFPM1 [Theobroma cacao]

Gene co-expression network

sample Hb_176052_010 Hb_176052_010 Hb_025771_010 Hb_025771_010 Hb_176052_010--Hb_025771_010 Hb_003579_020 Hb_003579_020 Hb_176052_010--Hb_003579_020 Hb_000326_060 Hb_000326_060 Hb_176052_010--Hb_000326_060 Hb_005568_080 Hb_005568_080 Hb_176052_010--Hb_005568_080 Hb_000879_010 Hb_000879_010 Hb_176052_010--Hb_000879_010 Hb_000914_090 Hb_000914_090 Hb_176052_010--Hb_000914_090 Hb_025771_010--Hb_000326_060 Hb_055384_010 Hb_055384_010 Hb_025771_010--Hb_055384_010 Hb_087596_010 Hb_087596_010 Hb_025771_010--Hb_087596_010 Hb_003446_050 Hb_003446_050 Hb_025771_010--Hb_003446_050 Hb_145979_010 Hb_145979_010 Hb_025771_010--Hb_145979_010 Hb_000122_040 Hb_000122_040 Hb_003579_020--Hb_000122_040 Hb_000103_060 Hb_000103_060 Hb_003579_020--Hb_000103_060 Hb_001214_140 Hb_001214_140 Hb_003579_020--Hb_001214_140 Hb_097007_010 Hb_097007_010 Hb_003579_020--Hb_097007_010 Hb_043623_010 Hb_043623_010 Hb_003579_020--Hb_043623_010 Hb_004005_010 Hb_004005_010 Hb_003579_020--Hb_004005_010 Hb_000326_060--Hb_005568_080 Hb_033772_050 Hb_033772_050 Hb_000326_060--Hb_033772_050 Hb_009265_090 Hb_009265_090 Hb_000326_060--Hb_009265_090 Hb_009486_190 Hb_009486_190 Hb_000326_060--Hb_009486_190 Hb_000264_090 Hb_000264_090 Hb_000326_060--Hb_000264_090 Hb_000363_140 Hb_000363_140 Hb_000326_060--Hb_000363_140 Hb_021888_050 Hb_021888_050 Hb_005568_080--Hb_021888_050 Hb_005568_080--Hb_033772_050 Hb_005568_080--Hb_009486_190 Hb_009510_040 Hb_009510_040 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220 Hb_002811_230 Hb_002811_230 Hb_000879_010--Hb_002811_230 Hb_000879_010--Hb_000914_090 Hb_001442_020 Hb_001442_020 Hb_000879_010--Hb_001442_020 Hb_007617_020 Hb_007617_020 Hb_000879_010--Hb_007617_020 Hb_000196_050 Hb_000196_050 Hb_000879_010--Hb_000196_050 Hb_001205_070 Hb_001205_070 Hb_000879_010--Hb_001205_070 Hb_000914_090--Hb_001205_070 Hb_000914_090--Hb_000196_050 Hb_000914_090--Hb_002811_230 Hb_002909_070 Hb_002909_070 Hb_000914_090--Hb_002909_070 Hb_006582_020 Hb_006582_020 Hb_000914_090--Hb_006582_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221077 0.470626 0 0.0899163 0.0816481 0.271406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194708 0.918189 0.134303 0.188003 0

CAGE analysis