Hb_026687_030

Information

Type -
Description -
Location Contig26687: 21810-34482
Sequence    

Annotation

kegg
ID atr:s00038p00220080
description AMTR_s00038p00220080; hypothetical protein
nr
ID ERN14688.1
description hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID U5D2V8
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00038p00220080 PE=4 SV=1
Gene Ontology
ID GO:0016758
description 7-deoxyloganetin glucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026687_030 0.0 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
2 Hb_015220_010 0.300606162 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
3 Hb_003960_020 0.3006918839 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_007254_030 0.3088717031 - - kinase, putative [Ricinus communis]
5 Hb_001401_100 0.3123646038 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_000084_170 0.3123931521 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000787_040 0.3132392014 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
8 Hb_011628_020 0.3189613832 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000622_080 0.3210797994 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
10 Hb_002217_460 0.3223240088 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
11 Hb_002227_010 0.329903277 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
12 Hb_000251_140 0.3349134329 - - leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_091889_010 0.3354089208 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_000152_310 0.3354831509 - - -
15 Hb_004648_110 0.3366620676 - - ATP binding protein, putative [Ricinus communis]
16 Hb_005144_190 0.3380164765 - - hypothetical protein F383_09558 [Gossypium arboreum]
17 Hb_033834_050 0.3455487978 - - conserved hypothetical protein [Ricinus communis]
18 Hb_054865_080 0.3489552601 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
19 Hb_003687_220 0.3494992538 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
20 Hb_187024_090 0.3529364607 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_026687_030 Hb_026687_030 Hb_015220_010 Hb_015220_010 Hb_026687_030--Hb_015220_010 Hb_003960_020 Hb_003960_020 Hb_026687_030--Hb_003960_020 Hb_007254_030 Hb_007254_030 Hb_026687_030--Hb_007254_030 Hb_001401_100 Hb_001401_100 Hb_026687_030--Hb_001401_100 Hb_000084_170 Hb_000084_170 Hb_026687_030--Hb_000084_170 Hb_000787_040 Hb_000787_040 Hb_026687_030--Hb_000787_040 Hb_015220_010--Hb_003960_020 Hb_000892_020 Hb_000892_020 Hb_015220_010--Hb_000892_020 Hb_001729_040 Hb_001729_040 Hb_015220_010--Hb_001729_040 Hb_000164_060 Hb_000164_060 Hb_015220_010--Hb_000164_060 Hb_000718_050 Hb_000718_050 Hb_015220_010--Hb_000718_050 Hb_000318_090 Hb_000318_090 Hb_015220_010--Hb_000318_090 Hb_007101_290 Hb_007101_290 Hb_003960_020--Hb_007101_290 Hb_001703_110 Hb_001703_110 Hb_003960_020--Hb_001703_110 Hb_003960_020--Hb_001729_040 Hb_009813_080 Hb_009813_080 Hb_003960_020--Hb_009813_080 Hb_003960_020--Hb_000892_020 Hb_000416_030 Hb_000416_030 Hb_007254_030--Hb_000416_030 Hb_001098_030 Hb_001098_030 Hb_007254_030--Hb_001098_030 Hb_000523_110 Hb_000523_110 Hb_007254_030--Hb_000523_110 Hb_004648_110 Hb_004648_110 Hb_007254_030--Hb_004648_110 Hb_003687_220 Hb_003687_220 Hb_007254_030--Hb_003687_220 Hb_012098_090 Hb_012098_090 Hb_007254_030--Hb_012098_090 Hb_000152_310 Hb_000152_310 Hb_001401_100--Hb_000152_310 Hb_103739_010 Hb_103739_010 Hb_001401_100--Hb_103739_010 Hb_003891_090 Hb_003891_090 Hb_001401_100--Hb_003891_090 Hb_001439_090 Hb_001439_090 Hb_001401_100--Hb_001439_090 Hb_002890_080 Hb_002890_080 Hb_001401_100--Hb_002890_080 Hb_011628_020 Hb_011628_020 Hb_001401_100--Hb_011628_020 Hb_000685_090 Hb_000685_090 Hb_000084_170--Hb_000685_090 Hb_054865_080 Hb_054865_080 Hb_000084_170--Hb_054865_080 Hb_000049_240 Hb_000049_240 Hb_000084_170--Hb_000049_240 Hb_022793_010 Hb_022793_010 Hb_000084_170--Hb_022793_010 Hb_187024_090 Hb_187024_090 Hb_000084_170--Hb_187024_090 Hb_002823_020 Hb_002823_020 Hb_000787_040--Hb_002823_020 Hb_005048_060 Hb_005048_060 Hb_000787_040--Hb_005048_060 Hb_001638_080 Hb_001638_080 Hb_000787_040--Hb_001638_080 Hb_000772_060 Hb_000772_060 Hb_000787_040--Hb_000772_060 Hb_176052_010 Hb_176052_010 Hb_000787_040--Hb_176052_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.01078 0.0535065 0 0.0488655 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.212153 0 0.0307151 0.0406667

CAGE analysis