Hb_009813_080

Information

Type -
Description -
Location Contig9813: 84963-85387
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO38876.1
description hypothetical protein CISIN_1g045991mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DJT3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045991mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64405: 74157-85180 , PASA_asmbl_64408: 73897-88615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009813_080 0.0 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
2 Hb_002311_170 0.01689357 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
3 Hb_008479_020 0.2020972244 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
4 Hb_001085_100 0.2233928796 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_003052_230 0.2655323498 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003960_020 0.2717253752 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_011077_020 0.3037704471 - - kinase, putative [Ricinus communis]
8 Hb_001832_020 0.304192637 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
9 Hb_008289_050 0.3076770942 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
10 Hb_001798_020 0.309762419 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
11 Hb_001703_110 0.3120169747 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
12 Hb_001104_050 0.3213695293 - - -
13 Hb_000084_170 0.3255536709 - - conserved hypothetical protein [Ricinus communis]
14 Hb_021943_030 0.3266823576 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_007101_290 0.3277649502 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_001720_060 0.3494882689 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
17 Hb_015220_010 0.3512539203 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
18 Hb_005520_020 0.3523231323 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
19 Hb_116293_020 0.3523433686 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
20 Hb_027472_230 0.3524171328 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]

Gene co-expression network

sample Hb_009813_080 Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_009813_080--Hb_002311_170 Hb_008479_020 Hb_008479_020 Hb_009813_080--Hb_008479_020 Hb_001085_100 Hb_001085_100 Hb_009813_080--Hb_001085_100 Hb_003052_230 Hb_003052_230 Hb_009813_080--Hb_003052_230 Hb_003960_020 Hb_003960_020 Hb_009813_080--Hb_003960_020 Hb_011077_020 Hb_011077_020 Hb_009813_080--Hb_011077_020 Hb_002311_170--Hb_008479_020 Hb_002311_170--Hb_001085_100 Hb_002311_170--Hb_003960_020 Hb_002311_170--Hb_003052_230 Hb_002311_170--Hb_011077_020 Hb_008479_020--Hb_001085_100 Hb_001832_020 Hb_001832_020 Hb_008479_020--Hb_001832_020 Hb_008479_020--Hb_003052_230 Hb_027472_230 Hb_027472_230 Hb_008479_020--Hb_027472_230 Hb_001085_100--Hb_001832_020 Hb_001856_090 Hb_001856_090 Hb_001085_100--Hb_001856_090 Hb_001085_100--Hb_027472_230 Hb_083103_030 Hb_083103_030 Hb_003052_230--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_003052_230--Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_003052_230--Hb_172503_010 Hb_001995_020 Hb_001995_020 Hb_003052_230--Hb_001995_020 Hb_115472_010 Hb_115472_010 Hb_003052_230--Hb_115472_010 Hb_015220_010 Hb_015220_010 Hb_003960_020--Hb_015220_010 Hb_007101_290 Hb_007101_290 Hb_003960_020--Hb_007101_290 Hb_001703_110 Hb_001703_110 Hb_003960_020--Hb_001703_110 Hb_001729_040 Hb_001729_040 Hb_003960_020--Hb_001729_040 Hb_000892_020 Hb_000892_020 Hb_003960_020--Hb_000892_020 Hb_004460_050 Hb_004460_050 Hb_011077_020--Hb_004460_050 Hb_000868_100 Hb_000868_100 Hb_011077_020--Hb_000868_100 Hb_000772_060 Hb_000772_060 Hb_011077_020--Hb_000772_060 Hb_000671_170 Hb_000671_170 Hb_011077_020--Hb_000671_170 Hb_002211_040 Hb_002211_040 Hb_011077_020--Hb_002211_040 Hb_001113_030 Hb_001113_030 Hb_011077_020--Hb_001113_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.246034 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.458839 0 0.207153 0

CAGE analysis