Hb_011077_020

Information

Type -
Description -
Location Contig11077: 8568-14063
Sequence    

Annotation

kegg
ID rcu:RCOM_0815420
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002518280.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LVL5
description Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1
trembl
ID B9RX11
description Kinase, putative OS=Ricinus communis GN=RCOM_0815420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable serine threonine-protein kinase wnk4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03340: 8527-10189 , PASA_asmbl_03341: 9788-9935 , PASA_asmbl_03343: 13516-14056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011077_020 0.0 - - kinase, putative [Ricinus communis]
2 Hb_004460_050 0.2512379578 - - chaperone protein DNAj, putative [Ricinus communis]
3 Hb_000868_100 0.251464264 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
4 Hb_000772_060 0.2665558206 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000671_170 0.2736154595 - - kinase, putative [Ricinus communis]
6 Hb_002211_040 0.2885574635 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
7 Hb_001113_030 0.2896825364 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
8 Hb_001720_060 0.2953029425 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
9 Hb_002311_170 0.2969277579 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
10 Hb_001079_020 0.2988654741 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
11 Hb_009813_080 0.3037704471 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
12 Hb_003435_060 0.304126885 - - carbonic anhydrase, putative [Ricinus communis]
13 Hb_001085_100 0.3053028565 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_008173_030 0.3059876728 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
15 Hb_005048_050 0.3062603802 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
16 Hb_000111_300 0.3064274504 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
17 Hb_031527_060 0.3066656445 - - glutamate decarboxylase, putative [Ricinus communis]
18 Hb_089032_010 0.3080499755 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
19 Hb_005048_060 0.3081904861 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011689_140 0.3084169345 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_011077_020 Hb_011077_020 Hb_004460_050 Hb_004460_050 Hb_011077_020--Hb_004460_050 Hb_000868_100 Hb_000868_100 Hb_011077_020--Hb_000868_100 Hb_000772_060 Hb_000772_060 Hb_011077_020--Hb_000772_060 Hb_000671_170 Hb_000671_170 Hb_011077_020--Hb_000671_170 Hb_002211_040 Hb_002211_040 Hb_011077_020--Hb_002211_040 Hb_001113_030 Hb_001113_030 Hb_011077_020--Hb_001113_030 Hb_004460_050--Hb_000868_100 Hb_000160_240 Hb_000160_240 Hb_004460_050--Hb_000160_240 Hb_000260_290 Hb_000260_290 Hb_004460_050--Hb_000260_290 Hb_000694_060 Hb_000694_060 Hb_004460_050--Hb_000694_060 Hb_031527_060 Hb_031527_060 Hb_004460_050--Hb_031527_060 Hb_001117_070 Hb_001117_070 Hb_004460_050--Hb_001117_070 Hb_000868_100--Hb_000671_170 Hb_000868_100--Hb_000694_060 Hb_000671_160 Hb_000671_160 Hb_000868_100--Hb_000671_160 Hb_008173_030 Hb_008173_030 Hb_000868_100--Hb_008173_030 Hb_000049_240 Hb_000049_240 Hb_000868_100--Hb_000049_240 Hb_001703_110 Hb_001703_110 Hb_000772_060--Hb_001703_110 Hb_000772_060--Hb_000868_100 Hb_000772_060--Hb_031527_060 Hb_002571_040 Hb_002571_040 Hb_000772_060--Hb_002571_040 Hb_101733_040 Hb_101733_040 Hb_000772_060--Hb_101733_040 Hb_000671_170--Hb_000671_160 Hb_000672_150 Hb_000672_150 Hb_000671_170--Hb_000672_150 Hb_001959_120 Hb_001959_120 Hb_000671_170--Hb_001959_120 Hb_000671_170--Hb_001113_030 Hb_000671_170--Hb_008173_030 Hb_002401_010 Hb_002401_010 Hb_002211_040--Hb_002401_010 Hb_143629_030 Hb_143629_030 Hb_002211_040--Hb_143629_030 Hb_002301_200 Hb_002301_200 Hb_002211_040--Hb_002301_200 Hb_000111_300 Hb_000111_300 Hb_002211_040--Hb_000111_300 Hb_000275_070 Hb_000275_070 Hb_002211_040--Hb_000275_070 Hb_005725_190 Hb_005725_190 Hb_002211_040--Hb_005725_190 Hb_124315_030 Hb_124315_030 Hb_001113_030--Hb_124315_030 Hb_000111_480 Hb_000111_480 Hb_001113_030--Hb_000111_480 Hb_001113_030--Hb_000672_150 Hb_001113_030--Hb_008173_030 Hb_001113_030--Hb_001959_120 Hb_089032_010 Hb_089032_010 Hb_001113_030--Hb_089032_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.658656 48.2644 0.412773 2.04339 1.06654 0.722287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.325068 32.9656 7.93898 24.5629 0.688471

CAGE analysis