Hb_002571_040

Information

Type -
Description -
Location Contig2571: 38575-50927
Sequence    

Annotation

kegg
ID rcu:RCOM_1321060
description hypothetical protein
nr
ID XP_002525683.1
description hypothetical protein RCOM_1321060 [Ricinus communis]
swissprot
ID Q08A72
description Protein EMSY-LIKE 4 OS=Arabidopsis thaliana GN=EML4 PE=2 SV=1
trembl
ID B9SI64
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1321060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26757: 49087-49838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_040 0.0 - - hypothetical protein RCOM_1321060 [Ricinus communis]
2 Hb_005965_020 0.2168243397 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000216_010 0.2375009802 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
4 Hb_000772_060 0.2691617929 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002918_130 0.280329465 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
6 Hb_011099_010 0.2836805012 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_006503_010 0.2839864666 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_105660_010 0.285598873 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
9 Hb_004453_190 0.2942389195 - - -
10 Hb_003020_180 0.3006708298 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
11 Hb_139569_010 0.3067036228 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
12 Hb_155541_020 0.3134277643 - - -
13 Hb_073096_010 0.3136474015 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
14 Hb_025048_020 0.3141543509 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000813_150 0.3175756171 - - -
16 Hb_001016_020 0.3185931591 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007163_040 0.3190794694 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
18 Hb_002067_130 0.319502194 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
19 Hb_000599_220 0.3217060926 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
20 Hb_186647_010 0.3237264641 - - -

Gene co-expression network

sample Hb_002571_040 Hb_002571_040 Hb_005965_020 Hb_005965_020 Hb_002571_040--Hb_005965_020 Hb_000216_010 Hb_000216_010 Hb_002571_040--Hb_000216_010 Hb_000772_060 Hb_000772_060 Hb_002571_040--Hb_000772_060 Hb_002918_130 Hb_002918_130 Hb_002571_040--Hb_002918_130 Hb_011099_010 Hb_011099_010 Hb_002571_040--Hb_011099_010 Hb_006503_010 Hb_006503_010 Hb_002571_040--Hb_006503_010 Hb_005965_020--Hb_011099_010 Hb_154600_010 Hb_154600_010 Hb_005965_020--Hb_154600_010 Hb_000031_330 Hb_000031_330 Hb_005965_020--Hb_000031_330 Hb_001269_250 Hb_001269_250 Hb_005965_020--Hb_001269_250 Hb_002602_030 Hb_002602_030 Hb_005965_020--Hb_002602_030 Hb_000216_010--Hb_006503_010 Hb_143629_030 Hb_143629_030 Hb_000216_010--Hb_143629_030 Hb_009775_040 Hb_009775_040 Hb_000216_010--Hb_009775_040 Hb_139569_010 Hb_139569_010 Hb_000216_010--Hb_139569_010 Hb_001470_070 Hb_001470_070 Hb_000216_010--Hb_001470_070 Hb_001703_110 Hb_001703_110 Hb_000772_060--Hb_001703_110 Hb_000868_100 Hb_000868_100 Hb_000772_060--Hb_000868_100 Hb_011077_020 Hb_011077_020 Hb_000772_060--Hb_011077_020 Hb_031527_060 Hb_031527_060 Hb_000772_060--Hb_031527_060 Hb_101733_040 Hb_101733_040 Hb_000772_060--Hb_101733_040 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_007849_010 Hb_007849_010 Hb_002918_130--Hb_007849_010 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_002918_130--Hb_006503_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010 Hb_007101_290 Hb_007101_290 Hb_002918_130--Hb_007101_290 Hb_002936_020 Hb_002936_020 Hb_011099_010--Hb_002936_020 Hb_001754_160 Hb_001754_160 Hb_011099_010--Hb_001754_160 Hb_003266_070 Hb_003266_070 Hb_011099_010--Hb_003266_070 Hb_011099_010--Hb_000031_330 Hb_002289_140 Hb_002289_140 Hb_011099_010--Hb_002289_140 Hb_006503_010--Hb_009775_040 Hb_006503_010--Hb_143629_030 Hb_006503_010--Hb_001470_070 Hb_002675_200 Hb_002675_200 Hb_006503_010--Hb_002675_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0359428 0.650306 0.139364 0.818504 0 0.127353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.587592 0 0.239276 0

CAGE analysis