Hb_001269_250

Information

Type -
Description -
Location Contig1269: 288880-291735
Sequence    

Annotation

kegg
ID rcu:RCOM_0470910
description hypothetical protein
nr
ID XP_012067516.1
description PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
swissprot
ID Q9S9P3
description Factor of DNA methylation 1 OS=Arabidopsis thaliana GN=FDM1 PE=1 SV=1
trembl
ID A0A067LD09
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27002 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08186: 289340-289694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_250 0.0 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
2 Hb_000599_310 0.2320283796 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
3 Hb_000886_030 0.2434139207 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
4 Hb_000261_170 0.2472514288 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_000089_200 0.2557982132 - - hypothetical protein VITISV_019292 [Vitis vinifera]
6 Hb_011099_010 0.266359489 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_003178_020 0.2782837806 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
8 Hb_005965_020 0.2812562411 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000318_080 0.2846317686 - - PREDICTED: la-related protein 6C [Jatropha curcas]
10 Hb_133661_010 0.2864333401 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
11 Hb_000072_340 0.2906441304 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002338_030 0.2908932473 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
13 Hb_002227_010 0.2926038727 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
14 Hb_004724_450 0.292839741 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
15 Hb_123301_010 0.2955348428 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001269_290 0.2967370321 - - PREDICTED: uncharacterized protein LOC103438859 [Malus domestica]
17 Hb_002631_300 0.2968740305 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
18 Hb_000654_030 0.2987221981 - - -
19 Hb_034904_010 0.2987511094 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
20 Hb_000754_070 0.2994283493 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001269_250 Hb_001269_250 Hb_000599_310 Hb_000599_310 Hb_001269_250--Hb_000599_310 Hb_000886_030 Hb_000886_030 Hb_001269_250--Hb_000886_030 Hb_000261_170 Hb_000261_170 Hb_001269_250--Hb_000261_170 Hb_000089_200 Hb_000089_200 Hb_001269_250--Hb_000089_200 Hb_011099_010 Hb_011099_010 Hb_001269_250--Hb_011099_010 Hb_003178_020 Hb_003178_020 Hb_001269_250--Hb_003178_020 Hb_002338_030 Hb_002338_030 Hb_000599_310--Hb_002338_030 Hb_002835_340 Hb_002835_340 Hb_000599_310--Hb_002835_340 Hb_000599_310--Hb_000886_030 Hb_007849_010 Hb_007849_010 Hb_000599_310--Hb_007849_010 Hb_000049_200 Hb_000049_200 Hb_000599_310--Hb_000049_200 Hb_002960_090 Hb_002960_090 Hb_000599_310--Hb_002960_090 Hb_003687_030 Hb_003687_030 Hb_000886_030--Hb_003687_030 Hb_001675_030 Hb_001675_030 Hb_000886_030--Hb_001675_030 Hb_000529_280 Hb_000529_280 Hb_000886_030--Hb_000529_280 Hb_172632_050 Hb_172632_050 Hb_000886_030--Hb_172632_050 Hb_004787_040 Hb_004787_040 Hb_000886_030--Hb_004787_040 Hb_000465_510 Hb_000465_510 Hb_000886_030--Hb_000465_510 Hb_128473_010 Hb_128473_010 Hb_000261_170--Hb_128473_010 Hb_001355_120 Hb_001355_120 Hb_000261_170--Hb_001355_120 Hb_000649_340 Hb_000649_340 Hb_000261_170--Hb_000649_340 Hb_001828_100 Hb_001828_100 Hb_000261_170--Hb_001828_100 Hb_004158_100 Hb_004158_100 Hb_000261_170--Hb_004158_100 Hb_004785_050 Hb_004785_050 Hb_000261_170--Hb_004785_050 Hb_000654_030 Hb_000654_030 Hb_000089_200--Hb_000654_030 Hb_001329_020 Hb_001329_020 Hb_000089_200--Hb_001329_020 Hb_000110_380 Hb_000110_380 Hb_000089_200--Hb_000110_380 Hb_002259_060 Hb_002259_060 Hb_000089_200--Hb_002259_060 Hb_011485_090 Hb_011485_090 Hb_000089_200--Hb_011485_090 Hb_000656_190 Hb_000656_190 Hb_000089_200--Hb_000656_190 Hb_005965_020 Hb_005965_020 Hb_011099_010--Hb_005965_020 Hb_002936_020 Hb_002936_020 Hb_011099_010--Hb_002936_020 Hb_001754_160 Hb_001754_160 Hb_011099_010--Hb_001754_160 Hb_003266_070 Hb_003266_070 Hb_011099_010--Hb_003266_070 Hb_000031_330 Hb_000031_330 Hb_011099_010--Hb_000031_330 Hb_002289_140 Hb_002289_140 Hb_011099_010--Hb_002289_140 Hb_006970_140 Hb_006970_140 Hb_003178_020--Hb_006970_140 Hb_002631_300 Hb_002631_300 Hb_003178_020--Hb_002631_300 Hb_001767_060 Hb_001767_060 Hb_003178_020--Hb_001767_060 Hb_000173_050 Hb_000173_050 Hb_003178_020--Hb_000173_050 Hb_106552_070 Hb_106552_070 Hb_003178_020--Hb_106552_070 Hb_004449_040 Hb_004449_040 Hb_003178_020--Hb_004449_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.538764 1.03773 2.73574 0.10581 0.0165491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.602212 2.09778 0 0.624069 0

CAGE analysis