Hb_003052_230

Information

Type -
Description -
Location Contig3052: 194198-194614
Sequence    

Annotation

kegg
ID rcu:RCOM_1464580
description hypothetical protein
nr
ID XP_002514525.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZU51
description Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2
trembl
ID B9RLA6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1464580 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc c3hc4 type (ring finger) protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32200: 194178-194530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008479_020 0.2201583893 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
3 Hb_083103_030 0.2510588407 - - putative retrotransposon protein [Malus domestica]
4 Hb_103832_030 0.2516768521 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_172503_010 0.2518119207 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
6 Hb_001995_020 0.25245901 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
7 Hb_115472_010 0.2547830638 - - -
8 Hb_002740_020 0.2559031777 - - -
9 Hb_012368_060 0.2560731251 - - -
10 Hb_011457_060 0.2561742779 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
11 Hb_001999_110 0.2564246724 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
12 Hb_000635_120 0.2564535152 - - -
13 Hb_035492_010 0.2573590107 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
14 Hb_022137_030 0.2581036021 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
15 Hb_010267_010 0.2635689897 - - -
16 Hb_010120_010 0.2638625162 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
17 Hb_001369_330 0.2640827243 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004881_110 0.2641071618 - - -
19 Hb_000265_180 0.2647182873 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
20 Hb_003388_090 0.2650152841 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_003052_230 Hb_003052_230 Hb_008479_020 Hb_008479_020 Hb_003052_230--Hb_008479_020 Hb_083103_030 Hb_083103_030 Hb_003052_230--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_003052_230--Hb_103832_030 Hb_172503_010 Hb_172503_010 Hb_003052_230--Hb_172503_010 Hb_001995_020 Hb_001995_020 Hb_003052_230--Hb_001995_020 Hb_115472_010 Hb_115472_010 Hb_003052_230--Hb_115472_010 Hb_001085_100 Hb_001085_100 Hb_008479_020--Hb_001085_100 Hb_001832_020 Hb_001832_020 Hb_008479_020--Hb_001832_020 Hb_009813_080 Hb_009813_080 Hb_008479_020--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_008479_020--Hb_002311_170 Hb_027472_230 Hb_027472_230 Hb_008479_020--Hb_027472_230 Hb_083103_030--Hb_103832_030 Hb_083103_030--Hb_172503_010 Hb_083103_030--Hb_115472_010 Hb_002740_020 Hb_002740_020 Hb_083103_030--Hb_002740_020 Hb_022137_030 Hb_022137_030 Hb_083103_030--Hb_022137_030 Hb_083103_030--Hb_001995_020 Hb_103832_030--Hb_172503_010 Hb_103832_030--Hb_115472_010 Hb_103832_030--Hb_002740_020 Hb_103832_030--Hb_022137_030 Hb_103832_030--Hb_001995_020 Hb_172503_010--Hb_115472_010 Hb_172503_010--Hb_002740_020 Hb_172503_010--Hb_022137_030 Hb_172503_010--Hb_001995_020 Hb_001995_020--Hb_002740_020 Hb_001995_020--Hb_115472_010 Hb_001995_020--Hb_022137_030 Hb_115472_010--Hb_002740_020 Hb_115472_010--Hb_022137_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.18123 0.688325 0 0 0.20483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28946 28.9373 0 18.8287 0

CAGE analysis