Hb_003891_090

Information

Type -
Description -
Location Contig3891: 76860-77633
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38988: 77183-77633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003891_090 0.0 - - -
2 Hb_000152_310 0.2325030726 - - -
3 Hb_001401_100 0.238141205 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
4 Hb_091889_010 0.2452694107 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_002227_010 0.2509797219 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
6 Hb_000656_410 0.258282699 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
7 Hb_011628_020 0.2585807461 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006570_050 0.2596971635 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
9 Hb_000120_150 0.2636155404 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
10 Hb_002217_460 0.2684436617 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
11 Hb_042871_010 0.2714175471 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
12 Hb_001439_090 0.2790218753 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000943_060 0.282424831 - - PREDICTED: uncharacterized protein LOC105635589 [Jatropha curcas]
14 Hb_005321_010 0.2832783294 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
15 Hb_103739_010 0.2842072272 - - sodium/hydrogen exchanger, putative [Ricinus communis]
16 Hb_001164_030 0.3035473924 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
17 Hb_000175_140 0.3071568866 - - conserved hypothetical protein [Ricinus communis]
18 Hb_117092_010 0.3106323954 - - acyl-CoA oxidase, putative [Ricinus communis]
19 Hb_033834_050 0.3147343033 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000072_340 0.3174862223 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003891_090 Hb_003891_090 Hb_000152_310 Hb_000152_310 Hb_003891_090--Hb_000152_310 Hb_001401_100 Hb_001401_100 Hb_003891_090--Hb_001401_100 Hb_091889_010 Hb_091889_010 Hb_003891_090--Hb_091889_010 Hb_002227_010 Hb_002227_010 Hb_003891_090--Hb_002227_010 Hb_000656_410 Hb_000656_410 Hb_003891_090--Hb_000656_410 Hb_011628_020 Hb_011628_020 Hb_003891_090--Hb_011628_020 Hb_000152_310--Hb_001401_100 Hb_103739_010 Hb_103739_010 Hb_000152_310--Hb_103739_010 Hb_012725_010 Hb_012725_010 Hb_000152_310--Hb_012725_010 Hb_049415_010 Hb_049415_010 Hb_000152_310--Hb_049415_010 Hb_000152_310--Hb_011628_020 Hb_001401_100--Hb_103739_010 Hb_001439_090 Hb_001439_090 Hb_001401_100--Hb_001439_090 Hb_002890_080 Hb_002890_080 Hb_001401_100--Hb_002890_080 Hb_001401_100--Hb_011628_020 Hb_010506_010 Hb_010506_010 Hb_091889_010--Hb_010506_010 Hb_000120_150 Hb_000120_150 Hb_091889_010--Hb_000120_150 Hb_001164_030 Hb_001164_030 Hb_091889_010--Hb_001164_030 Hb_000943_060 Hb_000943_060 Hb_091889_010--Hb_000943_060 Hb_002217_460 Hb_002217_460 Hb_091889_010--Hb_002217_460 Hb_091889_010--Hb_011628_020 Hb_002227_010--Hb_000120_150 Hb_002227_010--Hb_002217_460 Hb_002227_010--Hb_091889_010 Hb_000886_030 Hb_000886_030 Hb_002227_010--Hb_000886_030 Hb_004724_450 Hb_004724_450 Hb_002227_010--Hb_004724_450 Hb_000270_740 Hb_000270_740 Hb_002227_010--Hb_000270_740 Hb_042871_010 Hb_042871_010 Hb_000656_410--Hb_042871_010 Hb_011609_110 Hb_011609_110 Hb_000656_410--Hb_011609_110 Hb_002784_100 Hb_002784_100 Hb_000656_410--Hb_002784_100 Hb_033834_050 Hb_033834_050 Hb_000656_410--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000656_410--Hb_003891_080 Hb_005321_010 Hb_005321_010 Hb_000656_410--Hb_005321_010 Hb_011628_020--Hb_033834_050 Hb_011628_020--Hb_042871_010 Hb_011628_020--Hb_000943_060 Hb_011628_020--Hb_002784_100 Hb_011628_020--Hb_003891_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385842 38.273 2.44143 68.8844 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.06086 180.24 10.7431 3.83642 0

CAGE analysis