Hb_000152_310

Information

Type -
Description -
Location Contig152: 266016-269760
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_310 0.0 - - -
2 Hb_001401_100 0.1424063202 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
3 Hb_003891_090 0.2325030726 - - -
4 Hb_103739_010 0.254529147 - - sodium/hydrogen exchanger, putative [Ricinus communis]
5 Hb_012725_010 0.2770009608 - - -
6 Hb_049415_010 0.301589547 - - -
7 Hb_011628_020 0.3080164731 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008609_030 0.3104012904 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_005520_020 0.3161437364 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
10 Hb_116293_020 0.3166655978 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
11 Hb_015057_030 0.321559462 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
12 Hb_015220_010 0.3271953922 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
13 Hb_006746_010 0.3308776438 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_026687_030 0.3354831509 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
15 Hb_009449_010 0.3399884651 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
16 Hb_003960_020 0.3442564166 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_002890_080 0.3492084298 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001439_090 0.3499744355 - - conserved hypothetical protein [Ricinus communis]
19 Hb_042871_010 0.3562833492 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
20 Hb_000787_040 0.3577778584 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000152_310 Hb_000152_310 Hb_001401_100 Hb_001401_100 Hb_000152_310--Hb_001401_100 Hb_003891_090 Hb_003891_090 Hb_000152_310--Hb_003891_090 Hb_103739_010 Hb_103739_010 Hb_000152_310--Hb_103739_010 Hb_012725_010 Hb_012725_010 Hb_000152_310--Hb_012725_010 Hb_049415_010 Hb_049415_010 Hb_000152_310--Hb_049415_010 Hb_011628_020 Hb_011628_020 Hb_000152_310--Hb_011628_020 Hb_001401_100--Hb_103739_010 Hb_001401_100--Hb_003891_090 Hb_001439_090 Hb_001439_090 Hb_001401_100--Hb_001439_090 Hb_002890_080 Hb_002890_080 Hb_001401_100--Hb_002890_080 Hb_001401_100--Hb_011628_020 Hb_091889_010 Hb_091889_010 Hb_003891_090--Hb_091889_010 Hb_002227_010 Hb_002227_010 Hb_003891_090--Hb_002227_010 Hb_000656_410 Hb_000656_410 Hb_003891_090--Hb_000656_410 Hb_003891_090--Hb_011628_020 Hb_001226_010 Hb_001226_010 Hb_103739_010--Hb_001226_010 Hb_103739_010--Hb_001439_090 Hb_001437_160 Hb_001437_160 Hb_103739_010--Hb_001437_160 Hb_103739_010--Hb_002890_080 Hb_012725_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_012725_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_012725_010--Hb_116293_020 Hb_009449_010 Hb_009449_010 Hb_012725_010--Hb_009449_010 Hb_004724_350 Hb_004724_350 Hb_012725_010--Hb_004724_350 Hb_016859_010 Hb_016859_010 Hb_012725_010--Hb_016859_010 Hb_049415_010--Hb_005520_020 Hb_049415_010--Hb_116293_020 Hb_049415_010--Hb_009449_010 Hb_049415_010--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_049415_010--Hb_187136_010 Hb_033834_050 Hb_033834_050 Hb_011628_020--Hb_033834_050 Hb_042871_010 Hb_042871_010 Hb_011628_020--Hb_042871_010 Hb_000943_060 Hb_000943_060 Hb_011628_020--Hb_000943_060 Hb_011628_020--Hb_091889_010 Hb_002784_100 Hb_002784_100 Hb_011628_020--Hb_002784_100 Hb_003891_080 Hb_003891_080 Hb_011628_020--Hb_003891_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0120731 0 0.0107827 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0522648 0 0 0

CAGE analysis