Hb_000416_030

Information

Type transcription factor
Description TF Family: OFP
Location Contig416: 40534-41853
Sequence    

Annotation

kegg
ID rcu:RCOM_1252020
description hypothetical protein
nr
ID XP_002522269.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VZN1
description Transcription repressor OFP5 OS=Arabidopsis thaliana GN=OFP5 PE=1 SV=1
trembl
ID B9S8F0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1252020 PE=4 SV=1
Gene Ontology
ID GO:0043232
description transcription repressor ofp5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_030 0.0 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
2 Hb_012490_020 0.2091225736 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
3 Hb_000523_110 0.255180563 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
4 Hb_007254_030 0.2596658545 - - kinase, putative [Ricinus communis]
5 Hb_003687_220 0.2654614442 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
6 Hb_000622_080 0.2836754181 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
7 Hb_000191_080 0.2903443412 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
8 Hb_000668_130 0.2951284106 - - -
9 Hb_010691_010 0.2955537511 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_001269_470 0.3069815243 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
11 Hb_001098_030 0.3100866871 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
12 Hb_003181_060 0.3123900856 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
13 Hb_012098_090 0.3161795801 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_000788_140 0.3171849275 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003688_070 0.3189457453 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
16 Hb_153269_010 0.3191214201 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
17 Hb_012239_050 0.3193248613 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001755_030 0.3267977175 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
19 Hb_001450_030 0.3273505658 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
20 Hb_004648_110 0.3300399213 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000416_030 Hb_000416_030 Hb_012490_020 Hb_012490_020 Hb_000416_030--Hb_012490_020 Hb_000523_110 Hb_000523_110 Hb_000416_030--Hb_000523_110 Hb_007254_030 Hb_007254_030 Hb_000416_030--Hb_007254_030 Hb_003687_220 Hb_003687_220 Hb_000416_030--Hb_003687_220 Hb_000622_080 Hb_000622_080 Hb_000416_030--Hb_000622_080 Hb_000191_080 Hb_000191_080 Hb_000416_030--Hb_000191_080 Hb_000500_050 Hb_000500_050 Hb_012490_020--Hb_000500_050 Hb_001294_030 Hb_001294_030 Hb_012490_020--Hb_001294_030 Hb_001755_030 Hb_001755_030 Hb_012490_020--Hb_001755_030 Hb_001269_470 Hb_001269_470 Hb_012490_020--Hb_001269_470 Hb_012490_020--Hb_000191_080 Hb_001450_030 Hb_001450_030 Hb_000523_110--Hb_001450_030 Hb_000152_210 Hb_000152_210 Hb_000523_110--Hb_000152_210 Hb_012022_140 Hb_012022_140 Hb_000523_110--Hb_012022_140 Hb_000523_110--Hb_001269_470 Hb_000005_300 Hb_000005_300 Hb_000523_110--Hb_000005_300 Hb_015807_160 Hb_015807_160 Hb_000523_110--Hb_015807_160 Hb_001098_030 Hb_001098_030 Hb_007254_030--Hb_001098_030 Hb_007254_030--Hb_000523_110 Hb_004648_110 Hb_004648_110 Hb_007254_030--Hb_004648_110 Hb_007254_030--Hb_003687_220 Hb_012098_090 Hb_012098_090 Hb_007254_030--Hb_012098_090 Hb_170426_010 Hb_170426_010 Hb_003687_220--Hb_170426_010 Hb_005144_190 Hb_005144_190 Hb_003687_220--Hb_005144_190 Hb_008759_020 Hb_008759_020 Hb_003687_220--Hb_008759_020 Hb_002338_030 Hb_002338_030 Hb_003687_220--Hb_002338_030 Hb_001449_100 Hb_001449_100 Hb_003687_220--Hb_001449_100 Hb_004679_060 Hb_004679_060 Hb_003687_220--Hb_004679_060 Hb_002908_070 Hb_002908_070 Hb_000622_080--Hb_002908_070 Hb_002784_100 Hb_002784_100 Hb_000622_080--Hb_002784_100 Hb_000002_260 Hb_000002_260 Hb_000622_080--Hb_000002_260 Hb_000622_080--Hb_001449_100 Hb_002217_460 Hb_002217_460 Hb_000622_080--Hb_002217_460 Hb_043623_010 Hb_043623_010 Hb_000622_080--Hb_043623_010 Hb_000156_210 Hb_000156_210 Hb_000191_080--Hb_000156_210 Hb_003688_070 Hb_003688_070 Hb_000191_080--Hb_003688_070 Hb_007632_170 Hb_007632_170 Hb_000191_080--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000191_080--Hb_019040_030 Hb_000162_120 Hb_000162_120 Hb_000191_080--Hb_000162_120 Hb_000191_080--Hb_000500_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317674 0.226776 0.672244 0.371568 0 0.0302519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0362349 2.39441 0 0.125398 1.30434

CAGE analysis