Hb_012490_020

Information

Type -
Description -
Location Contig12490: 41433-43145
Sequence    

Annotation

kegg
ID rcu:RCOM_1046460
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076982.1
description PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
swissprot
ID Q9LNP9
description Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2
trembl
ID A0A067KNK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07441 PE=3 SV=1
Gene Ontology
ID GO:0004722
description abscisic insensitive 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07555: 40512-40625 , PASA_asmbl_07556: 40762-40892 , PASA_asmbl_07558: 41671-42184 , PASA_asmbl_07559: 42306-42625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_020 0.0 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
2 Hb_000416_030 0.2091225736 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
3 Hb_000500_050 0.2210406785 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_001294_030 0.2309572467 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
5 Hb_001755_030 0.2374522808 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
6 Hb_001269_470 0.2376748574 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
7 Hb_000191_080 0.2527364978 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
8 Hb_004024_020 0.2602760361 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000879_230 0.2631573593 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
10 Hb_010691_010 0.2644913765 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_000483_100 0.2648466473 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
12 Hb_001098_030 0.2677642172 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
13 Hb_003181_060 0.2738345162 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
14 Hb_000152_480 0.275129727 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
15 Hb_007558_130 0.277200307 - - -
16 Hb_012239_050 0.2795140458 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003688_070 0.2839648366 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
18 Hb_001373_130 0.2868694769 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000523_110 0.2880301644 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
20 Hb_010577_040 0.2884956636 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]

Gene co-expression network

sample Hb_012490_020 Hb_012490_020 Hb_000416_030 Hb_000416_030 Hb_012490_020--Hb_000416_030 Hb_000500_050 Hb_000500_050 Hb_012490_020--Hb_000500_050 Hb_001294_030 Hb_001294_030 Hb_012490_020--Hb_001294_030 Hb_001755_030 Hb_001755_030 Hb_012490_020--Hb_001755_030 Hb_001269_470 Hb_001269_470 Hb_012490_020--Hb_001269_470 Hb_000191_080 Hb_000191_080 Hb_012490_020--Hb_000191_080 Hb_000523_110 Hb_000523_110 Hb_000416_030--Hb_000523_110 Hb_007254_030 Hb_007254_030 Hb_000416_030--Hb_007254_030 Hb_003687_220 Hb_003687_220 Hb_000416_030--Hb_003687_220 Hb_000622_080 Hb_000622_080 Hb_000416_030--Hb_000622_080 Hb_000416_030--Hb_000191_080 Hb_003124_110 Hb_003124_110 Hb_000500_050--Hb_003124_110 Hb_002783_150 Hb_002783_150 Hb_000500_050--Hb_002783_150 Hb_000500_050--Hb_000191_080 Hb_000032_400 Hb_000032_400 Hb_000500_050--Hb_000032_400 Hb_001373_130 Hb_001373_130 Hb_000500_050--Hb_001373_130 Hb_000140_270 Hb_000140_270 Hb_000500_050--Hb_000140_270 Hb_000152_480 Hb_000152_480 Hb_001294_030--Hb_000152_480 Hb_001294_030--Hb_001755_030 Hb_003935_080 Hb_003935_080 Hb_001294_030--Hb_003935_080 Hb_001621_060 Hb_001621_060 Hb_001294_030--Hb_001621_060 Hb_004109_160 Hb_004109_160 Hb_001294_030--Hb_004109_160 Hb_001792_030 Hb_001792_030 Hb_001294_030--Hb_001792_030 Hb_000627_300 Hb_000627_300 Hb_001755_030--Hb_000627_300 Hb_001755_030--Hb_000152_480 Hb_007426_170 Hb_007426_170 Hb_001755_030--Hb_007426_170 Hb_000112_060 Hb_000112_060 Hb_001755_030--Hb_000112_060 Hb_114861_010 Hb_114861_010 Hb_001755_030--Hb_114861_010 Hb_003181_060 Hb_003181_060 Hb_001269_470--Hb_003181_060 Hb_001711_120 Hb_001711_120 Hb_001269_470--Hb_001711_120 Hb_027298_010 Hb_027298_010 Hb_001269_470--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_001269_470--Hb_009780_050 Hb_001322_230 Hb_001322_230 Hb_001269_470--Hb_001322_230 Hb_001269_470--Hb_001373_130 Hb_000156_210 Hb_000156_210 Hb_000191_080--Hb_000156_210 Hb_003688_070 Hb_003688_070 Hb_000191_080--Hb_003688_070 Hb_007632_170 Hb_007632_170 Hb_000191_080--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000191_080--Hb_019040_030 Hb_000162_120 Hb_000162_120 Hb_000191_080--Hb_000162_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0744927 0.427566 1.20634 0.665184 0 0.015127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101899 2.9126 0.40046 0.128126 3.56636

CAGE analysis