Hb_005426_010

Information

Type -
Description -
Location Contig5426: 11561-18516
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005426_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_007592_010 0.000154192 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
3 Hb_008092_010 0.0023008313 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
4 Hb_003702_020 0.002744712 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
5 Hb_000370_050 0.0027802457 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_042239_010 0.0070585147 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
7 Hb_048653_010 0.0083211781 - - PREDICTED: mavicyanin [Jatropha curcas]
8 Hb_013654_020 0.008463453 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
9 Hb_002342_040 0.0103864321 - - FERONIA, partial [Arabis alpina]
10 Hb_008221_010 0.0120998888 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
11 Hb_008953_020 0.0170207288 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
12 Hb_000135_040 0.017212741 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
13 Hb_122911_010 0.017589414 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
14 Hb_000045_270 0.0232751244 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001817_070 0.0248450318 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_010452_030 0.025966641 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
17 Hb_001100_020 0.0272841607 - - -
18 Hb_154646_010 0.0277455833 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_002400_110 0.0324631027 - - conserved hypothetical protein [Ricinus communis]
20 Hb_039814_010 0.0325704662 - - hypothetical protein JCGZ_05023 [Jatropha curcas]

Gene co-expression network

sample Hb_005426_010 Hb_005426_010 Hb_007592_010 Hb_007592_010 Hb_005426_010--Hb_007592_010 Hb_008092_010 Hb_008092_010 Hb_005426_010--Hb_008092_010 Hb_003702_020 Hb_003702_020 Hb_005426_010--Hb_003702_020 Hb_000370_050 Hb_000370_050 Hb_005426_010--Hb_000370_050 Hb_042239_010 Hb_042239_010 Hb_005426_010--Hb_042239_010 Hb_048653_010 Hb_048653_010 Hb_005426_010--Hb_048653_010 Hb_007592_010--Hb_008092_010 Hb_007592_010--Hb_003702_020 Hb_007592_010--Hb_000370_050 Hb_007592_010--Hb_042239_010 Hb_007592_010--Hb_048653_010 Hb_008092_010--Hb_003702_020 Hb_008092_010--Hb_000370_050 Hb_008092_010--Hb_042239_010 Hb_008092_010--Hb_048653_010 Hb_003702_020--Hb_000370_050 Hb_003702_020--Hb_042239_010 Hb_003702_020--Hb_048653_010 Hb_000370_050--Hb_042239_010 Hb_000370_050--Hb_048653_010 Hb_042239_010--Hb_048653_010 Hb_013654_020 Hb_013654_020 Hb_042239_010--Hb_013654_020 Hb_008221_010 Hb_008221_010 Hb_042239_010--Hb_008221_010 Hb_048653_010--Hb_013654_020 Hb_048653_010--Hb_008221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0170066 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00733118 0

CAGE analysis