Hb_007592_010

Information

Type -
Description -
Location Contig7592: 365-2933
Sequence    

Annotation

kegg
ID csv:101218348
description uncharacterized LOC101218348
nr
ID XP_011015231.1
description PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061E6J4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007592_010 0.0 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
2 Hb_005426_010 0.000154192 - - polyprotein [Oryza australiensis]
3 Hb_008092_010 0.0021466396 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
4 Hb_003702_020 0.0025905205 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
5 Hb_000370_050 0.0026260542 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_042239_010 0.0069043262 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
7 Hb_048653_010 0.0081669911 - - PREDICTED: mavicyanin [Jatropha curcas]
8 Hb_013654_020 0.0083092662 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
9 Hb_002342_040 0.010540616 - - FERONIA, partial [Arabis alpina]
10 Hb_008221_010 0.0119457073 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
11 Hb_008953_020 0.0168665575 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
12 Hb_000135_040 0.0170585702 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
13 Hb_122911_010 0.0177435826 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
14 Hb_000045_270 0.0234292752 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001817_070 0.0246908837 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_010452_030 0.0261207816 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
17 Hb_001100_020 0.0274382959 - - -
18 Hb_154646_010 0.0275914458 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_002400_110 0.0326172138 - - conserved hypothetical protein [Ricinus communis]
20 Hb_039814_010 0.0326462387 - - hypothetical protein JCGZ_05023 [Jatropha curcas]

Gene co-expression network

sample Hb_007592_010 Hb_007592_010 Hb_005426_010 Hb_005426_010 Hb_007592_010--Hb_005426_010 Hb_008092_010 Hb_008092_010 Hb_007592_010--Hb_008092_010 Hb_003702_020 Hb_003702_020 Hb_007592_010--Hb_003702_020 Hb_000370_050 Hb_000370_050 Hb_007592_010--Hb_000370_050 Hb_042239_010 Hb_042239_010 Hb_007592_010--Hb_042239_010 Hb_048653_010 Hb_048653_010 Hb_007592_010--Hb_048653_010 Hb_005426_010--Hb_008092_010 Hb_005426_010--Hb_003702_020 Hb_005426_010--Hb_000370_050 Hb_005426_010--Hb_042239_010 Hb_005426_010--Hb_048653_010 Hb_008092_010--Hb_003702_020 Hb_008092_010--Hb_000370_050 Hb_008092_010--Hb_042239_010 Hb_008092_010--Hb_048653_010 Hb_003702_020--Hb_000370_050 Hb_003702_020--Hb_042239_010 Hb_003702_020--Hb_048653_010 Hb_000370_050--Hb_042239_010 Hb_000370_050--Hb_048653_010 Hb_042239_010--Hb_048653_010 Hb_013654_020 Hb_013654_020 Hb_042239_010--Hb_013654_020 Hb_008221_010 Hb_008221_010 Hb_042239_010--Hb_008221_010 Hb_048653_010--Hb_013654_020 Hb_048653_010--Hb_008221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0189753 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00818632 0

CAGE analysis