Hb_000370_050

Information

Type -
Description -
Location Contig370: 88823-96866
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000370_050 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_003702_020 3.55338e-05 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
3 Hb_008092_010 0.0004794159 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
4 Hb_007592_010 0.0026260542 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
5 Hb_005426_010 0.0027802457 - - polyprotein [Oryza australiensis]
6 Hb_042239_010 0.0042783086 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
7 Hb_048653_010 0.0055409928 - - PREDICTED: mavicyanin [Jatropha curcas]
8 Hb_013654_020 0.0056832703 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
9 Hb_008221_010 0.00931979 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
10 Hb_002342_040 0.0131664949 - - FERONIA, partial [Arabis alpina]
11 Hb_008953_020 0.0142407971 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
12 Hb_000135_040 0.0144328171 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
13 Hb_122911_010 0.0203691765 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
14 Hb_001817_070 0.02206549 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_154646_010 0.0249662241 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_000045_270 0.0260545465 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010452_030 0.0287458696 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
18 Hb_001100_020 0.030063287 - - -
19 Hb_039814_010 0.0340180725 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
20 Hb_002400_110 0.0352417771 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000370_050 Hb_000370_050 Hb_003702_020 Hb_003702_020 Hb_000370_050--Hb_003702_020 Hb_008092_010 Hb_008092_010 Hb_000370_050--Hb_008092_010 Hb_007592_010 Hb_007592_010 Hb_000370_050--Hb_007592_010 Hb_005426_010 Hb_005426_010 Hb_000370_050--Hb_005426_010 Hb_042239_010 Hb_042239_010 Hb_000370_050--Hb_042239_010 Hb_048653_010 Hb_048653_010 Hb_000370_050--Hb_048653_010 Hb_003702_020--Hb_008092_010 Hb_003702_020--Hb_007592_010 Hb_003702_020--Hb_005426_010 Hb_003702_020--Hb_042239_010 Hb_003702_020--Hb_048653_010 Hb_008092_010--Hb_007592_010 Hb_008092_010--Hb_005426_010 Hb_008092_010--Hb_042239_010 Hb_008092_010--Hb_048653_010 Hb_007592_010--Hb_005426_010 Hb_007592_010--Hb_042239_010 Hb_007592_010--Hb_048653_010 Hb_005426_010--Hb_042239_010 Hb_005426_010--Hb_048653_010 Hb_042239_010--Hb_048653_010 Hb_013654_020 Hb_013654_020 Hb_042239_010--Hb_013654_020 Hb_008221_010 Hb_008221_010 Hb_042239_010--Hb_008221_010 Hb_048653_010--Hb_013654_020 Hb_048653_010--Hb_008221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.192106 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0840013 0

CAGE analysis