Hb_000173_200

Information

Type -
Description -
Location Contig173: 170687-171003
Sequence    

Annotation

kegg
ID rcu:RCOM_0678090
description hypothetical protein
nr
ID XP_002516785.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSR6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003228_070 0.0930599018 - - conserved hypothetical protein [Ricinus communis]
3 Hb_136850_040 0.1361481791 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000836_590 0.2345039956 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
5 Hb_001373_120 0.2359885602 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
6 Hb_003766_030 0.2360097737 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
7 Hb_008637_010 0.2360422328 - - Major latex protein, putative [Ricinus communis]
8 Hb_000264_200 0.2362624227 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
9 Hb_000120_140 0.2362752661 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
10 Hb_011671_300 0.2363226465 - - 14.3 kDa oleosin [Jatropha curcas]
11 Hb_004712_100 0.2374148897 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
12 Hb_132148_010 0.2376556839 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
13 Hb_001198_070 0.238018184 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000522_100 0.2386134338 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
15 Hb_002232_330 0.2386434828 - - -
16 Hb_025248_030 0.2388893126 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
17 Hb_002582_090 0.2389529195 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
18 Hb_048826_010 0.2393731887 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
19 Hb_005171_030 0.2405299371 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
20 Hb_129319_010 0.240568647 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000173_200 Hb_000173_200 Hb_003228_070 Hb_003228_070 Hb_000173_200--Hb_003228_070 Hb_136850_040 Hb_136850_040 Hb_000173_200--Hb_136850_040 Hb_000836_590 Hb_000836_590 Hb_000173_200--Hb_000836_590 Hb_001373_120 Hb_001373_120 Hb_000173_200--Hb_001373_120 Hb_003766_030 Hb_003766_030 Hb_000173_200--Hb_003766_030 Hb_008637_010 Hb_008637_010 Hb_000173_200--Hb_008637_010 Hb_003228_070--Hb_136850_040 Hb_004607_100 Hb_004607_100 Hb_003228_070--Hb_004607_100 Hb_002345_080 Hb_002345_080 Hb_003228_070--Hb_002345_080 Hb_003939_020 Hb_003939_020 Hb_003228_070--Hb_003939_020 Hb_003228_070--Hb_000836_590 Hb_000184_080 Hb_000184_080 Hb_136850_040--Hb_000184_080 Hb_136850_040--Hb_003939_020 Hb_009773_040 Hb_009773_040 Hb_136850_040--Hb_009773_040 Hb_000336_300 Hb_000336_300 Hb_136850_040--Hb_000336_300 Hb_000389_250 Hb_000389_250 Hb_000836_590--Hb_000389_250 Hb_181810_010 Hb_181810_010 Hb_000836_590--Hb_181810_010 Hb_006395_020 Hb_006395_020 Hb_000836_590--Hb_006395_020 Hb_000111_220 Hb_000111_220 Hb_000836_590--Hb_000111_220 Hb_001405_250 Hb_001405_250 Hb_000836_590--Hb_001405_250 Hb_002205_260 Hb_002205_260 Hb_000836_590--Hb_002205_260 Hb_001373_120--Hb_008637_010 Hb_001373_120--Hb_003766_030 Hb_000264_200 Hb_000264_200 Hb_001373_120--Hb_000264_200 Hb_000120_140 Hb_000120_140 Hb_001373_120--Hb_000120_140 Hb_011671_300 Hb_011671_300 Hb_001373_120--Hb_011671_300 Hb_004712_100 Hb_004712_100 Hb_001373_120--Hb_004712_100 Hb_003766_030--Hb_008637_010 Hb_003766_030--Hb_000264_200 Hb_003766_030--Hb_000120_140 Hb_003766_030--Hb_011671_300 Hb_132148_010 Hb_132148_010 Hb_003766_030--Hb_132148_010 Hb_008637_010--Hb_000264_200 Hb_008637_010--Hb_000120_140 Hb_008637_010--Hb_011671_300 Hb_008637_010--Hb_004712_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.73923 0.645528 0 0.285783 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis