Hb_170698_010

Information

Type -
Description -
Location Contig170698: 16-1134
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa025968mg
description hypothetical protein
nr
ID XP_009630466.1
description PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170698_010 0.0 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
2 Hb_101808_010 0.1371224216 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
3 Hb_034271_030 0.1881034387 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
4 Hb_001226_020 0.191665739 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
5 Hb_000002_050 0.1920154726 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
6 Hb_001898_070 0.1940355476 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
7 Hb_000244_160 0.2029302226 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
8 Hb_000019_130 0.2029987112 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
9 Hb_000172_560 0.2041821564 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
10 Hb_027450_010 0.2069362621 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
11 Hb_003906_090 0.2070041953 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
12 Hb_000865_060 0.2082083406 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
13 Hb_007075_050 0.2083056835 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_010710_040 0.2110025289 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002603_160 0.2123000067 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
16 Hb_168773_010 0.2123563977 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_001090_050 0.2129382347 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
18 Hb_001189_050 0.2129522109 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
19 Hb_005188_090 0.2134488255 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
20 Hb_000367_060 0.2135185312 - - diacylglycerol kinase, theta, putative [Ricinus communis]

Gene co-expression network

sample Hb_170698_010 Hb_170698_010 Hb_101808_010 Hb_101808_010 Hb_170698_010--Hb_101808_010 Hb_034271_030 Hb_034271_030 Hb_170698_010--Hb_034271_030 Hb_001226_020 Hb_001226_020 Hb_170698_010--Hb_001226_020 Hb_000002_050 Hb_000002_050 Hb_170698_010--Hb_000002_050 Hb_001898_070 Hb_001898_070 Hb_170698_010--Hb_001898_070 Hb_000244_160 Hb_000244_160 Hb_170698_010--Hb_000244_160 Hb_003906_090 Hb_003906_090 Hb_101808_010--Hb_003906_090 Hb_001189_050 Hb_001189_050 Hb_101808_010--Hb_001189_050 Hb_001294_010 Hb_001294_010 Hb_101808_010--Hb_001294_010 Hb_101808_010--Hb_001898_070 Hb_001357_010 Hb_001357_010 Hb_101808_010--Hb_001357_010 Hb_012490_040 Hb_012490_040 Hb_034271_030--Hb_012490_040 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_034271_030--Hb_000244_160 Hb_034271_030--Hb_001226_020 Hb_000723_260 Hb_000723_260 Hb_034271_030--Hb_000723_260 Hb_001266_060 Hb_001266_060 Hb_001226_020--Hb_001266_060 Hb_003750_080 Hb_003750_080 Hb_001226_020--Hb_003750_080 Hb_000427_050 Hb_000427_050 Hb_001226_020--Hb_000427_050 Hb_003687_100 Hb_003687_100 Hb_001226_020--Hb_003687_100 Hb_004452_010 Hb_004452_010 Hb_001226_020--Hb_004452_010 Hb_001454_190 Hb_001454_190 Hb_000002_050--Hb_001454_190 Hb_004846_070 Hb_004846_070 Hb_000002_050--Hb_004846_070 Hb_007747_200 Hb_007747_200 Hb_000002_050--Hb_007747_200 Hb_016901_010 Hb_016901_010 Hb_000002_050--Hb_016901_010 Hb_000019_130 Hb_000019_130 Hb_000002_050--Hb_000019_130 Hb_001373_180 Hb_001373_180 Hb_000002_050--Hb_001373_180 Hb_002307_170 Hb_002307_170 Hb_001898_070--Hb_002307_170 Hb_001898_070--Hb_004846_070 Hb_001898_070--Hb_000002_050 Hb_002585_020 Hb_002585_020 Hb_001898_070--Hb_002585_020 Hb_000340_390 Hb_000340_390 Hb_001898_070--Hb_000340_390 Hb_001898_070--Hb_001454_190 Hb_000244_160--Hb_027450_010 Hb_000244_160--Hb_000723_260 Hb_010417_050 Hb_010417_050 Hb_000244_160--Hb_010417_050 Hb_000577_010 Hb_000577_010 Hb_000244_160--Hb_000577_010 Hb_000707_050 Hb_000707_050 Hb_000244_160--Hb_000707_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0266049 0.0640168 0 0.0181938 0.105373 0.205602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0487339 0.191651 0.282781 0.10782 0.0785878

CAGE analysis