Hb_006745_060

Information

Type -
Description -
Location Contig6745: 64965-65445
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006745_060 0.0 - - -
2 Hb_005539_210 0.1465374615 - - -
3 Hb_004635_060 0.1573947618 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
4 Hb_002492_020 0.1583417209 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
5 Hb_000300_400 0.1675858149 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
6 Hb_001959_260 0.1739650235 - - -
7 Hb_010166_020 0.1798096527 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
8 Hb_017895_030 0.1822739909 transcription factor TF Family: C2H2 -
9 Hb_003050_070 0.1845166432 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007741_040 0.1851717485 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
11 Hb_010594_030 0.1890227035 - - -
12 Hb_003777_230 0.1917641915 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
13 Hb_003349_070 0.19423699 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
14 Hb_003211_050 0.1947181852 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_000106_100 0.1951330095 - - -
16 Hb_005211_070 0.1957430304 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
17 Hb_000453_300 0.1996264631 - - latex cystatin [Hevea brasiliensis]
18 Hb_000281_230 0.2019293693 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
19 Hb_034585_050 0.2022621745 - - -
20 Hb_000215_180 0.2024528419 - - hypothetical protein 17 [Hevea brasiliensis]

Gene co-expression network

sample Hb_006745_060 Hb_006745_060 Hb_005539_210 Hb_005539_210 Hb_006745_060--Hb_005539_210 Hb_004635_060 Hb_004635_060 Hb_006745_060--Hb_004635_060 Hb_002492_020 Hb_002492_020 Hb_006745_060--Hb_002492_020 Hb_000300_400 Hb_000300_400 Hb_006745_060--Hb_000300_400 Hb_001959_260 Hb_001959_260 Hb_006745_060--Hb_001959_260 Hb_010166_020 Hb_010166_020 Hb_006745_060--Hb_010166_020 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_000281_230 Hb_000281_230 Hb_004635_060--Hb_000281_230 Hb_000819_070 Hb_000819_070 Hb_004635_060--Hb_000819_070 Hb_004474_010 Hb_004474_010 Hb_004635_060--Hb_004474_010 Hb_006351_110 Hb_006351_110 Hb_004635_060--Hb_006351_110 Hb_003349_070 Hb_003349_070 Hb_004635_060--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_004635_060--Hb_004223_260 Hb_002492_020--Hb_010166_020 Hb_002492_020--Hb_010594_030 Hb_004055_060 Hb_004055_060 Hb_002492_020--Hb_004055_060 Hb_001198_030 Hb_001198_030 Hb_002492_020--Hb_001198_030 Hb_007741_040 Hb_007741_040 Hb_002492_020--Hb_007741_040 Hb_000603_210 Hb_000603_210 Hb_000300_400--Hb_000603_210 Hb_149683_010 Hb_149683_010 Hb_000300_400--Hb_149683_010 Hb_006816_440 Hb_006816_440 Hb_000300_400--Hb_006816_440 Hb_002235_230 Hb_002235_230 Hb_000300_400--Hb_002235_230 Hb_000300_400--Hb_001723_080 Hb_008864_060 Hb_008864_060 Hb_001959_260--Hb_008864_060 Hb_003211_050 Hb_003211_050 Hb_001959_260--Hb_003211_050 Hb_000250_010 Hb_000250_010 Hb_001959_260--Hb_000250_010 Hb_001959_260--Hb_005539_210 Hb_001276_060 Hb_001276_060 Hb_001959_260--Hb_001276_060 Hb_000545_170 Hb_000545_170 Hb_001959_260--Hb_000545_170 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_010166_020--Hb_001198_030 Hb_000052_010 Hb_000052_010 Hb_010166_020--Hb_000052_010 Hb_000526_020 Hb_000526_020 Hb_010166_020--Hb_000526_020 Hb_010166_020--Hb_007741_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.703323 0 0 0 0.635293 0.388064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16498 3.09962 1.35631 0.671018 0.297472

CAGE analysis