Hb_005211_070

Information

Type -
Description -
Location Contig5211: 41365-43204
Sequence    

Annotation

kegg
ID rcu:RCOM_0353240
description protein with unknown function
nr
ID XP_012082069.1
description PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A067JZI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18312 PE=4 SV=1
Gene Ontology
ID GO:0006950
description ist1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46750: 42411-42628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_070 0.0 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
2 Hb_010594_030 0.1294567696 - - -
3 Hb_002492_020 0.1448478077 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
4 Hb_010827_020 0.1485782651 - - 60S ribosomal protein L17B [Hevea brasiliensis]
5 Hb_000215_180 0.1494706344 - - hypothetical protein 17 [Hevea brasiliensis]
6 Hb_005539_210 0.1507579658 - - -
7 Hb_000676_240 0.1510271111 - - thioredoxin H-type 2 [Hevea brasiliensis]
8 Hb_002007_050 0.1555158443 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]
9 Hb_002928_210 0.1569305102 - - -
10 Hb_001545_060 0.161155824 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
11 Hb_001017_070 0.1619964889 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000380_020 0.1626600301 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
13 Hb_000106_100 0.1632907019 - - -
14 Hb_012395_210 0.1637237406 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000059_350 0.1644791362 - - glutamate dehydrogenase, putative [Ricinus communis]
16 Hb_000819_070 0.1646931186 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
17 Hb_001832_120 0.1654422153 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
18 Hb_001123_120 0.1655579127 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
19 Hb_003349_070 0.1661835369 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
20 Hb_034585_050 0.1680276162 - - -

Gene co-expression network

sample Hb_005211_070 Hb_005211_070 Hb_010594_030 Hb_010594_030 Hb_005211_070--Hb_010594_030 Hb_002492_020 Hb_002492_020 Hb_005211_070--Hb_002492_020 Hb_010827_020 Hb_010827_020 Hb_005211_070--Hb_010827_020 Hb_000215_180 Hb_000215_180 Hb_005211_070--Hb_000215_180 Hb_005539_210 Hb_005539_210 Hb_005211_070--Hb_005539_210 Hb_000676_240 Hb_000676_240 Hb_005211_070--Hb_000676_240 Hb_034585_050 Hb_034585_050 Hb_010594_030--Hb_034585_050 Hb_001102_250 Hb_001102_250 Hb_010594_030--Hb_001102_250 Hb_010594_030--Hb_002492_020 Hb_012395_210 Hb_012395_210 Hb_010594_030--Hb_012395_210 Hb_006351_110 Hb_006351_110 Hb_010594_030--Hb_006351_110 Hb_010166_020 Hb_010166_020 Hb_002492_020--Hb_010166_020 Hb_004055_060 Hb_004055_060 Hb_002492_020--Hb_004055_060 Hb_002492_020--Hb_005539_210 Hb_001198_030 Hb_001198_030 Hb_002492_020--Hb_001198_030 Hb_007741_040 Hb_007741_040 Hb_002492_020--Hb_007741_040 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_002248_100 Hb_002248_100 Hb_010827_020--Hb_002248_100 Hb_000635_080 Hb_000635_080 Hb_010827_020--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_002326_180 Hb_002326_180 Hb_000676_240--Hb_002326_180 Hb_017862_010 Hb_017862_010 Hb_000676_240--Hb_017862_010 Hb_002918_140 Hb_002918_140 Hb_000676_240--Hb_002918_140 Hb_005841_040 Hb_005841_040 Hb_000676_240--Hb_005841_040 Hb_002045_230 Hb_002045_230 Hb_000676_240--Hb_002045_230 Hb_001123_120 Hb_001123_120 Hb_000676_240--Hb_001123_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.51731 0.386453 0.302766 0.583764 4.51898 1.6984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0563 19.6 7.41313 4.71251 0.159748

CAGE analysis