Hb_005214_130

Information

Type -
Description -
Location Contig5214: 107815-111304
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_130 0.0 - - -
2 Hb_042729_010 0.1373648126 - - -
3 Hb_005539_210 0.1533369049 - - -
4 Hb_004206_030 0.164021484 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
5 Hb_001012_040 0.1669559885 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
6 Hb_001279_130 0.1738022109 - - hypothetical protein L484_017676 [Morus notabilis]
7 Hb_003106_140 0.1756637964 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012660_020 0.179083197 - - -
9 Hb_000934_030 0.1804827578 - - -
10 Hb_055259_010 0.1850980085 - - -
11 Hb_003878_030 0.1863813764 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
12 Hb_010594_030 0.1864472348 - - -
13 Hb_012239_100 0.1880867363 - - hypothetical protein VITISV_043897 [Vitis vinifera]
14 Hb_005618_040 0.1904896879 - - -
15 Hb_029243_040 0.1937813221 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
16 Hb_002492_020 0.1947529209 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
17 Hb_003680_070 0.1948261706 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
18 Hb_000260_580 0.1953211144 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001213_120 0.196243955 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
20 Hb_010710_020 0.1967273346 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]

Gene co-expression network

sample Hb_005214_130 Hb_005214_130 Hb_042729_010 Hb_042729_010 Hb_005214_130--Hb_042729_010 Hb_005539_210 Hb_005539_210 Hb_005214_130--Hb_005539_210 Hb_004206_030 Hb_004206_030 Hb_005214_130--Hb_004206_030 Hb_001012_040 Hb_001012_040 Hb_005214_130--Hb_001012_040 Hb_001279_130 Hb_001279_130 Hb_005214_130--Hb_001279_130 Hb_003106_140 Hb_003106_140 Hb_005214_130--Hb_003106_140 Hb_042729_010--Hb_004206_030 Hb_002936_050 Hb_002936_050 Hb_042729_010--Hb_002936_050 Hb_000934_030 Hb_000934_030 Hb_042729_010--Hb_000934_030 Hb_012725_110 Hb_012725_110 Hb_042729_010--Hb_012725_110 Hb_000419_040 Hb_000419_040 Hb_042729_010--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_042729_010--Hb_000003_840 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_060668_010 Hb_060668_010 Hb_004206_030--Hb_060668_010 Hb_004206_030--Hb_012725_110 Hb_000041_070 Hb_000041_070 Hb_004206_030--Hb_000041_070 Hb_004206_030--Hb_003106_140 Hb_002387_060 Hb_002387_060 Hb_004206_030--Hb_002387_060 Hb_001012_040--Hb_001723_080 Hb_000454_110 Hb_000454_110 Hb_001012_040--Hb_000454_110 Hb_001012_040--Hb_012395_210 Hb_001012_040--Hb_004206_030 Hb_001213_120 Hb_001213_120 Hb_001012_040--Hb_001213_120 Hb_002182_090 Hb_002182_090 Hb_001279_130--Hb_002182_090 Hb_000380_020 Hb_000380_020 Hb_001279_130--Hb_000380_020 Hb_029243_040 Hb_029243_040 Hb_001279_130--Hb_029243_040 Hb_001279_130--Hb_010594_030 Hb_001102_250 Hb_001102_250 Hb_001279_130--Hb_001102_250 Hb_006594_020 Hb_006594_020 Hb_001279_130--Hb_006594_020 Hb_003106_140--Hb_060668_010 Hb_000032_220 Hb_000032_220 Hb_003106_140--Hb_000032_220 Hb_003106_140--Hb_002387_060 Hb_001514_180 Hb_001514_180 Hb_003106_140--Hb_001514_180 Hb_003106_140--Hb_000041_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.444881 0.057217 0 0 0.143496 0.155224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03082 0.73354 0.640623 0.387908 0

CAGE analysis