Hb_028486_070

Information

Type -
Description -
Location Contig28486: 26684-27400
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID KDO53483.1
description hypothetical protein CISIN_1g028119mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067EEG2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028119mg PE=4 SV=1
Gene Ontology
ID GO:0097159
description hypothetical protein CISIN_1g028119mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028486_070 0.0 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
2 Hb_000948_100 0.2375863952 - - -
3 Hb_004157_110 0.2475779903 - - -
4 Hb_020580_010 0.2886037291 - - -
5 Hb_131060_010 0.292216 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
6 Hb_013429_020 0.3043858981 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
7 Hb_007101_230 0.3171201532 - - leucine rich repeat-containing protein, putative [Ricinus communis]
8 Hb_001638_220 0.3293678997 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003321_020 0.3376103624 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
10 Hb_003117_040 0.3386753917 - - cytochrome P450, putative [Ricinus communis]
11 Hb_007808_020 0.3434156866 - - -
12 Hb_000084_040 0.346545671 - - hypothetical protein RCOM_1007940 [Ricinus communis]
13 Hb_018464_060 0.3503951039 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_184403_010 0.3575633575 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
15 Hb_004668_100 0.3589565498 - - -
16 Hb_001911_060 0.3595221518 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_011316_120 0.3650406327 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
18 Hb_080048_020 0.3694113381 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001268_130 0.3698045255 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
20 Hb_000350_080 0.370001878 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_028486_070 Hb_028486_070 Hb_000948_100 Hb_000948_100 Hb_028486_070--Hb_000948_100 Hb_004157_110 Hb_004157_110 Hb_028486_070--Hb_004157_110 Hb_020580_010 Hb_020580_010 Hb_028486_070--Hb_020580_010 Hb_131060_010 Hb_131060_010 Hb_028486_070--Hb_131060_010 Hb_013429_020 Hb_013429_020 Hb_028486_070--Hb_013429_020 Hb_007101_230 Hb_007101_230 Hb_028486_070--Hb_007101_230 Hb_000350_080 Hb_000350_080 Hb_000948_100--Hb_000350_080 Hb_007808_020 Hb_007808_020 Hb_000948_100--Hb_007808_020 Hb_001959_150 Hb_001959_150 Hb_000948_100--Hb_001959_150 Hb_005072_010 Hb_005072_010 Hb_000948_100--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_000948_100--Hb_000068_030 Hb_004157_110--Hb_020580_010 Hb_004157_110--Hb_013429_020 Hb_174876_010 Hb_174876_010 Hb_004157_110--Hb_174876_010 Hb_000084_040 Hb_000084_040 Hb_004157_110--Hb_000084_040 Hb_011316_120 Hb_011316_120 Hb_004157_110--Hb_011316_120 Hb_020580_010--Hb_013429_020 Hb_001638_220 Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_003321_020 Hb_003321_020 Hb_020580_010--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_020580_010--Hb_003117_040 Hb_009421_010 Hb_009421_010 Hb_020580_010--Hb_009421_010 Hb_131060_010--Hb_007808_020 Hb_011016_010 Hb_011016_010 Hb_131060_010--Hb_011016_010 Hb_131060_010--Hb_000350_080 Hb_131060_010--Hb_001959_150 Hb_001080_010 Hb_001080_010 Hb_131060_010--Hb_001080_010 Hb_013429_020--Hb_003321_020 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_001268_130 Hb_001268_130 Hb_007101_230--Hb_001268_130 Hb_183623_010 Hb_183623_010 Hb_007101_230--Hb_183623_010 Hb_008014_030 Hb_008014_030 Hb_007101_230--Hb_008014_030 Hb_026527_020 Hb_026527_020 Hb_007101_230--Hb_026527_020 Hb_000297_020 Hb_000297_020 Hb_007101_230--Hb_000297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.077771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0885662 0.153137 0.255444 0

CAGE analysis