Hb_019893_010

Information

Type -
Description -
Location Contig19893: 81-18261
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072753.1
description PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067KNB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07831 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019893_010 0.0 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
2 Hb_000205_210 0.1380771134 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
3 Hb_032050_050 0.1464719236 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
4 Hb_000140_260 0.1470109188 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
5 Hb_000497_120 0.1521609342 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000939_030 0.1523506927 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
7 Hb_031340_030 0.1525495199 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
8 Hb_000984_080 0.1557742731 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
9 Hb_027141_010 0.1603834899 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_004200_040 0.1624383958 - - laccase, putative [Ricinus communis]
11 Hb_005064_040 0.1633772907 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
12 Hb_000648_120 0.1639584091 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
13 Hb_001105_200 0.1670173347 - - catalytic, putative [Ricinus communis]
14 Hb_002110_270 0.1701219779 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
15 Hb_000539_080 0.170394354 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
16 Hb_000081_020 0.1708014248 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
17 Hb_076895_020 0.1718687144 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
18 Hb_002900_070 0.1766668754 - - conserved hypothetical protein [Ricinus communis]
19 Hb_020332_040 0.1795386954 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
20 Hb_000684_020 0.1809794042 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_019893_010 Hb_019893_010 Hb_000205_210 Hb_000205_210 Hb_019893_010--Hb_000205_210 Hb_032050_050 Hb_032050_050 Hb_019893_010--Hb_032050_050 Hb_000140_260 Hb_000140_260 Hb_019893_010--Hb_000140_260 Hb_000497_120 Hb_000497_120 Hb_019893_010--Hb_000497_120 Hb_000939_030 Hb_000939_030 Hb_019893_010--Hb_000939_030 Hb_031340_030 Hb_031340_030 Hb_019893_010--Hb_031340_030 Hb_004200_040 Hb_004200_040 Hb_000205_210--Hb_004200_040 Hb_000205_210--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_000205_210--Hb_003900_050 Hb_027141_010 Hb_027141_010 Hb_000205_210--Hb_027141_010 Hb_001105_200 Hb_001105_200 Hb_000205_210--Hb_001105_200 Hb_000984_080 Hb_000984_080 Hb_000205_210--Hb_000984_080 Hb_032050_050--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_032050_050--Hb_002110_270 Hb_002150_010 Hb_002150_010 Hb_032050_050--Hb_002150_010 Hb_002900_070 Hb_002900_070 Hb_032050_050--Hb_002900_070 Hb_006006_070 Hb_006006_070 Hb_032050_050--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_032050_050--Hb_076895_020 Hb_000140_260--Hb_004200_040 Hb_000140_260--Hb_027141_010 Hb_000140_260--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000140_260--Hb_000539_080 Hb_000140_260--Hb_000984_080 Hb_005064_040 Hb_005064_040 Hb_000497_120--Hb_005064_040 Hb_000497_120--Hb_031340_030 Hb_000497_120--Hb_027141_010 Hb_159015_010 Hb_159015_010 Hb_000497_120--Hb_159015_010 Hb_000497_120--Hb_000140_260 Hb_000497_120--Hb_000205_210 Hb_146023_010 Hb_146023_010 Hb_000939_030--Hb_146023_010 Hb_000976_020 Hb_000976_020 Hb_000939_030--Hb_000976_020 Hb_010712_020 Hb_010712_020 Hb_000939_030--Hb_010712_020 Hb_107258_010 Hb_107258_010 Hb_000939_030--Hb_107258_010 Hb_000939_030--Hb_000140_260 Hb_000939_030--Hb_002110_270 Hb_031340_030--Hb_005064_040 Hb_000081_020 Hb_000081_020 Hb_031340_030--Hb_000081_020 Hb_031340_030--Hb_000539_080 Hb_031340_030--Hb_000140_260 Hb_002999_090 Hb_002999_090 Hb_031340_030--Hb_002999_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.011986 0.946246 0.0478431 0.759716 0.124027 0.150659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0547993 5.30881 0.321064

CAGE analysis