Hb_002374_500

Information

Type -
Description -
Location Contig2374: 411869-412330
Sequence    

Annotation

kegg
ID rcu:RCOM_1031050
description hypothetical protein
nr
ID XP_012476878.1
description PREDICTED: putative F-box protein PP2-B12 [Gossypium raimondii]
swissprot
ID Q949S5
description F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1
trembl
ID A0A0D2RAZ3
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G261300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_500 0.0 - - PREDICTED: putative F-box protein PP2-B12 [Gossypium raimondii]
2 Hb_153470_010 0.1133512335 - - PREDICTED: uncharacterized protein LOC104804963 [Tarenaya hassleriana]
3 Hb_003095_090 0.2032721815 - - hypothetical protein JCGZ_10029 [Jatropha curcas]
4 Hb_024898_020 0.2188596354 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_041362_010 0.2819183838 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
6 Hb_006655_040 0.2997276727 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
7 Hb_003626_010 0.3161647912 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
8 Hb_006355_030 0.3216346768 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
9 Hb_003141_020 0.3220809377 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
10 Hb_002057_010 0.3438369328 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_007320_050 0.3464635702 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
12 Hb_004162_310 0.346494131 - - tonoplast intrinsic protein, putative [Ricinus communis]
13 Hb_014749_010 0.3465606422 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
14 Hb_002659_020 0.3476067884 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
15 Hb_009659_060 0.3477659321 - - cell wall invertase [Manihot esculenta]
16 Hb_000560_050 0.3494673276 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
17 Hb_005389_180 0.3509630647 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
18 Hb_000496_090 0.3511190994 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
19 Hb_038135_010 0.3512032403 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
20 Hb_000383_030 0.3512565531 - - -

Gene co-expression network

sample Hb_002374_500 Hb_002374_500 Hb_153470_010 Hb_153470_010 Hb_002374_500--Hb_153470_010 Hb_003095_090 Hb_003095_090 Hb_002374_500--Hb_003095_090 Hb_024898_020 Hb_024898_020 Hb_002374_500--Hb_024898_020 Hb_041362_010 Hb_041362_010 Hb_002374_500--Hb_041362_010 Hb_006655_040 Hb_006655_040 Hb_002374_500--Hb_006655_040 Hb_003626_010 Hb_003626_010 Hb_002374_500--Hb_003626_010 Hb_006355_030 Hb_006355_030 Hb_153470_010--Hb_006355_030 Hb_153470_010--Hb_041362_010 Hb_003141_020 Hb_003141_020 Hb_153470_010--Hb_003141_020 Hb_153470_010--Hb_024898_020 Hb_007520_040 Hb_007520_040 Hb_153470_010--Hb_007520_040 Hb_005316_010 Hb_005316_010 Hb_003095_090--Hb_005316_010 Hb_000022_210 Hb_000022_210 Hb_003095_090--Hb_000022_210 Hb_002671_070 Hb_002671_070 Hb_003095_090--Hb_002671_070 Hb_005946_130 Hb_005946_130 Hb_003095_090--Hb_005946_130 Hb_001048_120 Hb_001048_120 Hb_003095_090--Hb_001048_120 Hb_001798_020 Hb_001798_020 Hb_024898_020--Hb_001798_020 Hb_164646_010 Hb_164646_010 Hb_024898_020--Hb_164646_010 Hb_083103_030 Hb_083103_030 Hb_024898_020--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_024898_020--Hb_103832_030 Hb_012136_010 Hb_012136_010 Hb_041362_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_041362_010--Hb_005066_060 Hb_006533_010 Hb_006533_010 Hb_041362_010--Hb_006533_010 Hb_005563_020 Hb_005563_020 Hb_041362_010--Hb_005563_020 Hb_119748_010 Hb_119748_010 Hb_041362_010--Hb_119748_010 Hb_041362_010--Hb_003141_020 Hb_000809_070 Hb_000809_070 Hb_006655_040--Hb_000809_070 Hb_006655_040--Hb_003095_090 Hb_006655_040--Hb_003626_010 Hb_160246_010 Hb_160246_010 Hb_006655_040--Hb_160246_010 Hb_007451_080 Hb_007451_080 Hb_006655_040--Hb_007451_080 Hb_003626_010--Hb_007451_080 Hb_003626_010--Hb_003095_090 Hb_002791_040 Hb_002791_040 Hb_003626_010--Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_003626_010--Hb_001190_050 Hb_008014_060 Hb_008014_060 Hb_003626_010--Hb_008014_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.168993 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.183761 0 0.481228 0

CAGE analysis