Hb_000809_070

Information

Type transcription factor
Description TF Family: LOB
Location Contig809: 78328-79230
Sequence    

Annotation

kegg
ID rcu:RCOM_0602120
description Protein ASYMMETRIC LEAVES2, putative
nr
ID XP_012079180.1
description PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas]
swissprot
ID Q32SG3
description LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1
trembl
ID A0A067KA72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12349 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_070 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas]
2 Hb_007451_080 0.2204849719 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
3 Hb_006655_040 0.2594691733 - - tau class glutathione transferase GSTU15 [Populus trichocarpa]
4 Hb_003095_090 0.2720608578 - - hypothetical protein JCGZ_10029 [Jatropha curcas]
5 Hb_132330_010 0.2744138268 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027028_010 0.274626666 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
7 Hb_003850_030 0.2746286303 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
8 Hb_001743_080 0.275123604 - - -
9 Hb_003294_080 0.2756578301 - - -
10 Hb_185532_010 0.2760957154 - - hypothetical protein POPTR_0006s25570g [Populus trichocarpa]
11 Hb_001189_160 0.2763501375 - - -
12 Hb_073973_040 0.2765468055 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]
13 Hb_000123_130 0.2767054623 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
14 Hb_002233_180 0.2769777929 - - -
15 Hb_005503_020 0.2772155689 - - Hypothetical protein glysoja_025074 [Glycine soja]
16 Hb_002415_010 0.2772553944 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
17 Hb_158467_020 0.2773215947 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
18 Hb_003848_050 0.2776304548 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
19 Hb_004017_020 0.2777257103 - - Squalene monooxygenase, putative [Ricinus communis]
20 Hb_021943_010 0.2779258021 - - -

Gene co-expression network

sample Hb_000809_070 Hb_000809_070 Hb_007451_080 Hb_007451_080 Hb_000809_070--Hb_007451_080 Hb_006655_040 Hb_006655_040 Hb_000809_070--Hb_006655_040 Hb_003095_090 Hb_003095_090 Hb_000809_070--Hb_003095_090 Hb_132330_010 Hb_132330_010 Hb_000809_070--Hb_132330_010 Hb_027028_010 Hb_027028_010 Hb_000809_070--Hb_027028_010 Hb_003850_030 Hb_003850_030 Hb_000809_070--Hb_003850_030 Hb_002805_260 Hb_002805_260 Hb_007451_080--Hb_002805_260 Hb_007654_010 Hb_007654_010 Hb_007451_080--Hb_007654_010 Hb_007645_110 Hb_007645_110 Hb_007451_080--Hb_007645_110 Hb_003626_010 Hb_003626_010 Hb_007451_080--Hb_003626_010 Hb_007451_080--Hb_027028_010 Hb_006655_040--Hb_003095_090 Hb_006655_040--Hb_003626_010 Hb_160246_010 Hb_160246_010 Hb_006655_040--Hb_160246_010 Hb_006655_040--Hb_007451_080 Hb_002374_500 Hb_002374_500 Hb_006655_040--Hb_002374_500 Hb_003095_090--Hb_002374_500 Hb_005316_010 Hb_005316_010 Hb_003095_090--Hb_005316_010 Hb_000022_210 Hb_000022_210 Hb_003095_090--Hb_000022_210 Hb_002671_070 Hb_002671_070 Hb_003095_090--Hb_002671_070 Hb_005946_130 Hb_005946_130 Hb_003095_090--Hb_005946_130 Hb_001048_120 Hb_001048_120 Hb_003095_090--Hb_001048_120 Hb_132330_010--Hb_003850_030 Hb_001743_080 Hb_001743_080 Hb_132330_010--Hb_001743_080 Hb_003294_080 Hb_003294_080 Hb_132330_010--Hb_003294_080 Hb_185532_010 Hb_185532_010 Hb_132330_010--Hb_185532_010 Hb_073973_040 Hb_073973_040 Hb_132330_010--Hb_073973_040 Hb_000123_130 Hb_000123_130 Hb_132330_010--Hb_000123_130 Hb_003119_120 Hb_003119_120 Hb_027028_010--Hb_003119_120 Hb_003549_010 Hb_003549_010 Hb_027028_010--Hb_003549_010 Hb_000679_280 Hb_000679_280 Hb_027028_010--Hb_000679_280 Hb_027028_010--Hb_002805_260 Hb_000552_030 Hb_000552_030 Hb_027028_010--Hb_000552_030 Hb_173764_010 Hb_173764_010 Hb_027028_010--Hb_173764_010 Hb_003850_030--Hb_001743_080 Hb_001189_160 Hb_001189_160 Hb_003850_030--Hb_001189_160 Hb_003850_030--Hb_003294_080 Hb_003850_030--Hb_185532_010 Hb_003850_030--Hb_073973_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.910352 0.0426755 0.023551 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0906571 0.0828312 0.530051 0

CAGE analysis