Hb_142734_020

Information

Type -
Description -
Location Contig142734: 11615-12567
Sequence    

Annotation

kegg
ID sbi:SORBI_10g005070
description SORBIDRAFT_10g005070, Sb10g005070; hypothetical protein
nr
ID XP_012438866.1
description PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2T985
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142734_020 0.0 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
2 Hb_048308_010 0.1302333692 - - Peroxidase superfamily protein [Theobroma cacao]
3 Hb_005211_110 0.1311121609 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
4 Hb_008764_010 0.1372641925 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
5 Hb_001246_150 0.1385565997 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
6 Hb_174514_010 0.1659763662 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
7 Hb_007645_110 0.1805984816 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
8 Hb_000203_030 0.1841372724 - - -
9 Hb_089843_010 0.1928379608 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
10 Hb_000059_290 0.2078492299 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
11 Hb_007017_110 0.2123114956 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_001998_190 0.2207979041 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
13 Hb_003086_180 0.2235352102 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
14 Hb_007654_010 0.2283712108 - - valacyclovir hydrolase, putative [Ricinus communis]
15 Hb_000933_120 0.2290426252 - - hypothetical protein L484_011925 [Morus notabilis]
16 Hb_000976_420 0.2296191597 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002553_100 0.2298073642 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
18 Hb_000613_270 0.2310697862 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
19 Hb_002435_070 0.2321875737 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
20 Hb_023774_010 0.2337998375 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]

Gene co-expression network

sample Hb_142734_020 Hb_142734_020 Hb_048308_010 Hb_048308_010 Hb_142734_020--Hb_048308_010 Hb_005211_110 Hb_005211_110 Hb_142734_020--Hb_005211_110 Hb_008764_010 Hb_008764_010 Hb_142734_020--Hb_008764_010 Hb_001246_150 Hb_001246_150 Hb_142734_020--Hb_001246_150 Hb_174514_010 Hb_174514_010 Hb_142734_020--Hb_174514_010 Hb_007645_110 Hb_007645_110 Hb_142734_020--Hb_007645_110 Hb_048308_010--Hb_005211_110 Hb_048308_010--Hb_001246_150 Hb_048308_010--Hb_008764_010 Hb_000976_420 Hb_000976_420 Hb_048308_010--Hb_000976_420 Hb_000933_120 Hb_000933_120 Hb_048308_010--Hb_000933_120 Hb_000507_010 Hb_000507_010 Hb_048308_010--Hb_000507_010 Hb_005211_110--Hb_001246_150 Hb_005211_110--Hb_008764_010 Hb_005211_110--Hb_000976_420 Hb_005211_110--Hb_000933_120 Hb_005211_110--Hb_000507_010 Hb_008764_010--Hb_001246_150 Hb_002435_070 Hb_002435_070 Hb_008764_010--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_008764_010--Hb_004725_040 Hb_001246_150--Hb_000933_120 Hb_001246_150--Hb_000976_420 Hb_001246_150--Hb_000507_010 Hb_089843_010 Hb_089843_010 Hb_174514_010--Hb_089843_010 Hb_003086_180 Hb_003086_180 Hb_174514_010--Hb_003086_180 Hb_023774_010 Hb_023774_010 Hb_174514_010--Hb_023774_010 Hb_000613_270 Hb_000613_270 Hb_174514_010--Hb_000613_270 Hb_047923_010 Hb_047923_010 Hb_174514_010--Hb_047923_010 Hb_001652_050 Hb_001652_050 Hb_174514_010--Hb_001652_050 Hb_007654_010 Hb_007654_010 Hb_007645_110--Hb_007654_010 Hb_001789_010 Hb_001789_010 Hb_007645_110--Hb_001789_010 Hb_002553_100 Hb_002553_100 Hb_007645_110--Hb_002553_100 Hb_000705_100 Hb_000705_100 Hb_007645_110--Hb_000705_100 Hb_007645_110--Hb_174514_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0239507 0.0683706 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0418192 0

CAGE analysis